PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG007925.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 568aa MW: 61877.9 Da PI: 7.4413 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.8 | 9.5e-09 | 379 | 426 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq CCG007925.1 379 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 426 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.39E-11 | 373 | 430 | No hit | No description |
SuperFamily | SSF47459 | 4.19E-17 | 373 | 444 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 375 | 425 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-17 | 375 | 443 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-6 | 379 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-10 | 381 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MEKDKLFVSE GANTAATIWN SCSFGMEMQA NELSCGPEKL ANCSLNPNWD NSLDQSDPFE 60 SALSSIVSSP VASGANANAN AIPNAGVGGD SFMIRELIGR LGNICNSGDI SPQCFVNNNN 120 NSTNTSCYST PLNSPPKLNL SMMDSRMRGN LPIPGNSVVK HPGLAPFPAD FVERAARYSC 180 FGSNNLGGLN KQFGLNESEF INRLMPRVEP GKLSRVSSNN SMKVTVSQAN VQESNKSSPQ 240 DGSLNSDKKF SRQSRPSTSE NGDSREESSV SEQVPGGKLS MKSQNDAHSR KRKSIPRGKA 300 KETPSSSPSA SDVKVAAEND DPKAKRSKSD ETTGSDKDTA KEKEEENGNQ KQNKNNSKPP 360 EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KAVMLDEIIN 420 YVQSLQRQVE FLSMKLSSVN PRMDVSMETL LSKDIFQSRG SMPHGLYPLD ASTPVFPYGY 480 QSQQGLALQN GMPSNAETQF SMNPLNAALR RNPSMHLPPL DGFGDPAALQ ASAMWEDDLQ 540 SVVQMGYGQN YQESFQGSVP STHMKIEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 288 | 293 | SRKRKS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU232845 | 0.0 | CU232845.1 Populus EST from severe drought-stressed opposite wood. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000012.1 | 0.0 | PREDICTED: transcription factor bHLH77 | ||||
TrEMBL | B9IAB6 | 0.0 | B9IAB6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s14650.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2530 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-78 | bHLH family protein |