PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007925.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 568aa    MW: 61877.9 Da    PI: 7.4413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007925.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-09379426455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  CCG007925.1 379 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 426
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.39E-11373430No hitNo description
SuperFamilySSF474594.19E-17373444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17375443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-6379426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MEKDKLFVSE GANTAATIWN SCSFGMEMQA NELSCGPEKL ANCSLNPNWD NSLDQSDPFE  60
SALSSIVSSP VASGANANAN AIPNAGVGGD SFMIRELIGR LGNICNSGDI SPQCFVNNNN  120
NSTNTSCYST PLNSPPKLNL SMMDSRMRGN LPIPGNSVVK HPGLAPFPAD FVERAARYSC  180
FGSNNLGGLN KQFGLNESEF INRLMPRVEP GKLSRVSSNN SMKVTVSQAN VQESNKSSPQ  240
DGSLNSDKKF SRQSRPSTSE NGDSREESSV SEQVPGGKLS MKSQNDAHSR KRKSIPRGKA  300
KETPSSSPSA SDVKVAAEND DPKAKRSKSD ETTGSDKDTA KEKEEENGNQ KQNKNNSKPP  360
EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KAVMLDEIIN  420
YVQSLQRQVE FLSMKLSSVN PRMDVSMETL LSKDIFQSRG SMPHGLYPLD ASTPVFPYGY  480
QSQQGLALQN GMPSNAETQF SMNPLNAALR RNPSMHLPPL DGFGDPAALQ ASAMWEDDLQ  540
SVVQMGYGQN YQESFQGSVP STHMKIEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288293SRKRKS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2328450.0CU232845.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000012.10.0PREDICTED: transcription factor bHLH77
TrEMBLB9IAB60.0B9IAB6_POPTR; Uncharacterized protein
STRINGPOPTR_0014s14650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-78bHLH family protein