PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007824.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 219aa    MW: 24712.1 Da    PI: 6.9534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007824.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.5e-0674123155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+  h + Er RR+r ++++  L +llP       +K +K +i ++A + I +L+
  CCG007824.1  74 RCNRHMMSERLRRERERHGYLALHSLLPLG-----TKKDKNSIMQMAAKRIEELE 123
                  577899**********************97.....7999999*******999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-1170137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.51973122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-676142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001279128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDGFFQDEWQ GDVFWDEIGP VNQGAFVPYI RRPGAESESS SKGAHPTNMN KRMVEFMRRS  60
FPVNIGAQES GSKRCNRHMM SERLRRERER HGYLALHSLL PLGTKKDKNS IMQMAAKRIE  120
ELEAYKSILE RRNGEIEEKL AGSGIVNVES TKIRIEVANP TSGVDPMVDV LNCLKSLGAK  180
TISIQSQISD QQLVAVMDIE TEIEAAEIEN AVKRTLARY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17285KRCNRHMMSERLRR
28287RLRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030573.11e-163PREDICTED: transcription factor bHLH92
TrEMBLB9HUD71e-133B9HUD7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s08760.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125722734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-28bHLH family protein