PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007787.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 138aa    MW: 15325.9 Da    PI: 5.3453
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007787.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-191667256
          AP2  2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr ++ +g+++AeIrd       + +r++lg+f taeeAa+a+++a+ +++g+
  CCG007787.1 16 KYRGVRKRP-WGKFAAEIRD----SarQGARVWLGTFNTAEEAARAYDRAAYAMRGH 67
                 8********.**********....33334**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.94E-191675No hitNo description
PROSITE profilePS5103223.6041674IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-311676IPR001471AP2/ERF domain
SMARTSM003805.6E-361680IPR001471AP2/ERF domain
PfamPF008476.4E-151667IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-231675IPR016177DNA-binding domain
PRINTSPR003679.6E-121728IPR001471AP2/ERF domain
PRINTSPR003679.6E-124056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDEDKIKSKD EGGEVKYRGV RKRPWGKFAA EIRDSARQGA RVWLGTFNTA EEAARAYDRA  60
AYAMRGHLAV LNFPNEYPNM AGNASVGSSS STPFSSSGYP GSSSSLSSTQ QEVFEFECLD  120
DKLLEELLEQ EEKRSKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-351612314114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030514.11e-98PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC55e-44ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLB9HU994e-54B9HU99_POPTR; Uncharacterized protein
STRINGPOPTR_0010s08330.17e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.13e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]