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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG007787.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 138aa MW: 15325.9 Da PI: 5.3453 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 16 | 67 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g+++AeIrd + +r++lg+f taeeAa+a+++a+ +++g+ CCG007787.1 16 KYRGVRKRP-WGKFAAEIRD----SarQGARVWLGTFNTAEEAARAYDRAAYAMRGH 67 8********.**********....33334**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.94E-19 | 16 | 75 | No hit | No description |
PROSITE profile | PS51032 | 23.604 | 16 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-31 | 16 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-36 | 16 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.4E-15 | 16 | 67 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-23 | 16 | 75 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.6E-12 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-12 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MDEDKIKSKD EGGEVKYRGV RKRPWGKFAA EIRDSARQGA RVWLGTFNTA EEAARAYDRA 60 AYAMRGHLAV LNFPNEYPNM AGNASVGSSS STPFSSSGYP GSSSSLSSTQ QEVFEFECLD 120 DKLLEELLEQ EEKRSKKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-35 | 16 | 123 | 14 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011030514.1 | 1e-98 | PREDICTED: ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 5e-44 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | B9HU99 | 4e-54 | B9HU99_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s08330.1 | 7e-55 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23220.1 | 3e-26 | ERF family protein |
Publications ? help Back to Top | |||
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