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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG007645.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 22029.8 Da PI: 5.7603 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 88.7 | 1e-27 | 6 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdke 91 lppGfrF P+deelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ +e k+ yf+s+r + n++t++g Wk g+ +e CCG007645.1 6 LPPGFRFCPSDEELVVHFLHRKAALLRCHP-DVIPDLGLYPYDPWQLDGtysilsKALSEGKKRYFYSRRTQ--------NKITSNGCWKpMAGRGEE 94 79*************************999.99**************8446666655557789999999854........77999*****65566666 PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + ++++vg+k+ + fy + +g +t+Wvm+eyrl CCG007645.1 95 LVLAsdSNKTVGTKNYFLFY---TADGIRTNWVMEEYRL 130 6555468889**********...68899*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-36 | 2 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.972 | 6 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-19 | 7 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MGSVNLPPGF RFCPSDEELV VHFLHRKAAL LRCHPDVIPD LGLYPYDPWQ LDGTYSILSK 60 ALSEGKKRYF YSRRTQNKIT SNGCWKPMAG RGEELVLASD SNKTVGTKNY FLFYTADGIR 120 TNWVMEEYRL SGFGTSASTK TRNRQKQDYS KWVICRVYER DLDEDDSGTD QLSCLDEVFL 180 SLDDLDEISL PK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-24 | 2 | 160 | 11 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB970796 | 2e-46 | AB970796.1 Populus tremula x Populus tremuloides PtxtNAC161 mRNA for NAC transcriptional factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011046125.1 | 1e-136 | PREDICTED: NAC transcription factor ONAC010-like isoform X2 | ||||
Swissprot | Q8GWK6 | 2e-68 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | B9GF87 | 1e-130 | B9GF87_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s21440.1 | 1e-137 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-70 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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