PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG007610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 20646.2 Da PI: 4.8179 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.7e-19 | 15 | 65 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +g+Wv+eIr+p gk++r++lg++ +e+Aa+a++ a++ l+g CCG007610.1 15 PRYRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYEMPEMAAAAYDVAALHLRG 65 68*******9.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-13 | 15 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.84E-21 | 15 | 74 | No hit | No description |
SMART | SM00380 | 1.5E-35 | 16 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.972 | 16 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-31 | 16 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 16 | 74 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.1E-13 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-13 | 55 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEGRTRDGHL GISPPRYRGV RQRKWGKWVS EIREPGKKTR IWLGSYEMPE MAAAAYDVAA 60 LHLRGRGAQL NFPEMVDSLP RPASSRTEDV QMAAQEAASL FRRPIKCSEG VSGSSSGGGG 120 SLGPVRVGLS PSQIQAINEA PLDSPKMWTE LAGALLLDEP VAMGDDIDVE LSDEWGEMEH 180 EHDSIWDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 17 | 78 | 6 | 68 | ATERF1 |
3gcc_A | 2e-17 | 17 | 78 | 6 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155938 | 0.0 | EF155938.1 Populus trichocarpa TINY-like protein (TINYL19) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000046.1 | 1e-135 | PREDICTED: ethylene-responsive transcription factor ERF022-like | ||||
Swissprot | Q9LQ28 | 8e-50 | ERF22_ARATH; Ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | A9PL88 | 1e-107 | A9PL88_POPTR; TINY-like protein | ||||
STRING | POPTR_0013s10330.1 | 1e-108 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1777 | 31 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33760.1 | 5e-44 | ERF family protein |