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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG007436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 459aa MW: 50443.6 Da PI: 7.854 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.9e-19 | 278 | 326 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+tae+Aa a++ a+ l+g CCG007436.1 278 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYMLRG 326 8******9.**********955...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.16E-30 | 276 | 336 | No hit | No description |
SMART | SM00380 | 4.0E-35 | 277 | 340 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-22 | 277 | 335 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.247 | 277 | 334 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-31 | 277 | 335 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 278 | 289 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-12 | 278 | 326 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 300 | 316 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MEDQFPKIET FMHKELVAAY CSFHGMATRS KYFGDPTIWG ALSGAACRVE DGNSGMKSPS 60 PSSSERLFSS SESSSSADDQ VSGTDLIGNI PGLGKQDVVK KDHESCFMSG LNSINALGAN 120 SISDQTIKES SIPVNFLEPF PTLNNQAQVP EPPSPSSLSK SPNLTLFLQE PAAASLLHPS 180 KQVLDPPGKD QRCEPAVSLF PNTSFSMPQL GQIHCQPSNE WFKINQTLAN CSTKGFNDYW 240 LSTTKTQPMK YSGRRLQNHH QKPSFSSAST STSPGKLFRG VRQRHWGKWV AEIRLPRNRT 300 RVWLGTFDTA EDAAIAYDTA AYMLRGDYAH LNFPDLKHQL KSNSLNRTTA ALLEAKLQAI 360 SSQGNNISCQ NKHISDPPPP PSPNKINVHA TDATKLKGLS QNTTRKQWQF ELRGKSGGEV 420 IEDKKGQEVV ASDIDSIQLS RMPSLDMDMI WDALLVSDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-21 | 273 | 334 | 1 | 63 | ATERF1 |
3gcc_A | 7e-21 | 273 | 334 | 1 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155944 | 0.0 | EF155944.1 Populus trichocarpa RAP2-like protein (RAP2L3) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041893.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062-like isoform X1 | ||||
TrEMBL | A9PL93 | 0.0 | A9PL93_POPTR; RAP2-like protein | ||||
STRING | POPTR_0017s08250.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10102 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 4e-63 | ERF family protein |