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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG007431.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 309aa MW: 33480.9 Da PI: 6.3126 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109 | 2.5e-34 | 38 | 92 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl CCG007431.1 38 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 92 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.095 | 35 | 95 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-33 | 35 | 93 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-17 | 37 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-24 | 38 | 93 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.5E-9 | 40 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.7E-27 | 139 | 185 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MYSAIHSLPL DGHGDFQASL DGINLPGDAC LVLTTDPKPR LRWTAELHER FVDAVTQLGG 60 PDKATPKTIM RTMGVKGLTL YHLKSHLQKY RLGKQSCKES TDNSKDVGIA PSVAESQDTG 120 SSTSTSSRMI AQDLNDGYQV TEALRVQMEV QRRLHEQLEV QHHLQLRIEA QGKYLQSILE 180 KACKALNDRA VATAGLEAAR EELSELAIKV SNECAGIAPL DTMKMPSLSE LAAALGNRNA 240 SNVPARIGDC SVESCLTSTS SPISPMGVGS QVASTKKRSR PVLGNGDSLP FEGNIRQEVE 300 WTMSNILDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-19 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-19 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-19 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-19 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146817 | 0.0 | EF146817.1 Populus trichocarpa clone WS01214_H04 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041879.1 | 0.0 | PREDICTED: myb family transcription factor APL-like | ||||
Swissprot | Q8LAJ7 | 1e-134 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | A9PEQ8 | 0.0 | A9PEQ8_POPTR; Uncharacterized protein | ||||
STRING | XP_002518104.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13367 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 1e-122 | G2-like family protein |
Publications ? help Back to Top | |||
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