PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007369.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 381aa MW: 43375.9 Da PI: 9.759

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007369.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	72	125	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+ekAtPk +l+lm+v gL+++hvkSHLQ+YR+ CCG007369.1 72 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 125 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-29	68	126	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.685	68	128	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-14	70	126	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.2E-23	72	127	IPR006447	Myb domain, plants
Pfam	PF00249	9.4E-9	73	124	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MGGCEDQADN TPLMSSFDLN EEASSGEDIG TVEVSNSDAE KRTEENYANN ATSAGRNERK 60 STVRQYVRSR MPRLRWTPDL HLSFVHAVER LGGQEKATPK LVLQLMNVRG LSIAHVKSHL 120 QMYRSKKLDE AGQVLCQTYR SMQGRGCIQS KFHQMPVNPQ QCFRMESGGI VLARNSTEHT 180 FGNSLLHSSL FQRPLSNKTS FSRCQQWEAD KHGVSSLARK DLGQGLDTST TEIRPMRPVR 240 FLEDRRWPPL EMVKNRWKII RNNPTSVTCT NSCSPPQAHQ NSSSPRSFET TCYWKPNEGN 300 SGNDIKIKQS LFNSSLSIGN FNSFKPEFEP PFRVELNHDK MLKDKEWLPD LQLRLSQRVG 360 IKDRKTHCRS TQEISTKLSL S

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MGGCEDQADN TPLMSSFDLN EEASSGEDIG TVEVSNSDAE KRTEENYANN ATSAGRNERK  60
STVRQYVRSR MPRLRWTPDL HLSFVHAVER LGGQEKATPK LVLQLMNVRG LSIAHVKSHL  120
QMYRSKKLDE AGQVLCQTYR SMQGRGCIQS KFHQMPVNPQ QCFRMESGGI VLARNSTEHT  180
FGNSLLHSSL FQRPLSNKTS FSRCQQWEAD KHGVSSLARK DLGQGLDTST TEIRPMRPVR  240
FLEDRRWPPL EMVKNRWKII RNNPTSVTCT NSCSPPQAHQ NSSSPRSFET TCYWKPNEGN  300
SGNDIKIKQS LFNSSLSIGN FNSFKPEFEP PFRVELNHDK MLKDKEWLPD LQLRLSQRVG  360
IKDRKTHCRS TQEISTKLSL S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	73	127	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	73	127	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	73	127	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	73	127	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	73	127	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010999741.1	0.0	PREDICTED: uncharacterized protein LOC105107499
TrEMBL	A0A2K2AQG0	0.0	A0A2K2AQG0_POPTR; Uncharacterized protein
STRING	EOY27983	1e-124	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-37	G2-like family protein