PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007282.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 232aa    MW: 26808.1 Da    PI: 8.4573
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007282.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.22e-1671532128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk................kvka...eekewyfFskrdkkya..tgkrknr. 76 
                  ++GfrF+Pt+ elv++yL +kv g +l++  ++++ d+y + ePw++ +                +v+a    +++++fF++ +k ++  ++++  r 
  CCG007282.1   7 AVGFRFNPTEAELVCHYLYNKVMGLPLSCPYIVQDYDLYGHeEPWQIWEnfgeynnttsdgedddEVEAgpsPQDDLFFFTNLRKINPgmKSSKFDRg 104
                  58***************************889*******9878****644788998888877777333333233477999988887774445566664 PP

          NAM  77 a.tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +  + g+W+  g d + ++ ++  ++ ++   +  + +  +  ++W+m ey+l
  CCG007282.1 105 VgSSGGRWH--GDDVHSFH-SKGITWNRRRYCYK-NPNIGTPDASWIMLEYSL 153
                  2345899*9..77777777.45566777776665.566666799*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-184173IPR003441NAC domain
PROSITE profilePS5100520.1016173IPR003441NAC domain
PfamPF023653.9E-148153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSRANIAVGF RFNPTEAELV CHYLYNKVMG LPLSCPYIVQ DYDLYGHEEP WQIWENFGEY  60
NNTTSDGEDD DEVEAGPSPQ DDLFFFTNLR KINPGMKSSK FDRGVGSSGG RWHGDDVHSF  120
HSKGITWNRR RYCYKNPNIG TPDASWIMLE YSLDDSLMQN VPHYTVLCRI RKKSNTNWSR  180
KRKSSQSSSQ PKPTRQSKKL NSKLRTPPIK ETVHVTAHPP HVHVPVPWCE YL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183SRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371329.11e-136protein SOMBRERO
RefseqXP_024448620.11e-136protein SOMBRERO-like
TrEMBLA0A385JHK61e-134A0A385JHK6_POPTO; NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
TrEMBLB9N1S71e-134B9N1S7_POPTR; Uncharacterized protein
STRINGPOPTR_0019s09130.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.38e-12NAC family protein