PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007165.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 240aa MW: 27425.2 Da PI: 9.105

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007165.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	72	124	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++h +Er+RR+++ + +++Lr llP + ++K s ++ + v+YIk+Lq CCG007165.1 72 KKMMHRNIERQRRQEMTTLYATLRALLPLEF--IKGKRSISDHMNESVNYIKYLQ 124 6899***********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.14E-14	68	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.03E-10	71	128	No hit	No description
PROSITE profile	PS50888	13.662	71	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-10	72	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	72	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-5	77	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MFPLHQGDEL CFNISSDPHQ QHDIPQDLIL ARYAALQGSD TTNKMENGRR RFLISIDSNH 60 DVARDHSKNN NKKMMHRNIE RQRRQEMTTL YATLRALLPL EFIKGKRSIS DHMNESVNYI 120 KYLQNKIKEL SAKRDGLKKL SNLSFDSPSG SSNKYSPISP VTLQPYPGGI EVVFDSDFRG 180 QDFPLSRVLQ VLLEEGISVV NCVSTKVNER IFHTVQTEVN DPACLNLSEL RQKLTLRVVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030012.1	1e-179	PREDICTED: transcription factor bHLH118-like
Swissprot	Q9STJ6	1e-45	BH126_ARATH; Transcription factor bHLH126
TrEMBL	B9I4H5	1e-170	B9I4H5_POPTR; Uncharacterized protein
STRING	POPTR_0012s14080.1	1e-170	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	5e-48	bHLH family protein