PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007120.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 365aa MW: 42189.1 Da PI: 6.3925

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007120.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.7	3.7e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kkv+++++++ +vik+vd+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s CCG007120.1 7 VPPGFRFHPTDEELVDYYLRKKVNSRRIDV-DVIKDVDLYKIEPWDLQElcRIGTeEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS- 102 69**************************.9***********954555442556**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 k+ l+g++ktLvfykgrap+g+k+dW+mheyrle CCG007120.1 103 KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-61	5	159	IPR003441	NAC domain
PROSITE profile	PS51005	59.891	7	159	IPR003441	NAC domain
Pfam	PF02365	7.0E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MNTFTHVPPG FRFHPTDEEL VDYYLRKKVN SRRIDVDVIK DVDLYKIEPW DLQELCRIGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GTPQASIEEG WVVCRVFKKR LPTMRKVSEH ESVCWYDDQV 180 AFMHDLDSPK QNSQPDLGYQ FPYPCKKEID LQYQIPHDHF LQLPLLQSPK LLQSAPTISC 240 NSISAAYGLD INQASTIQSS TLTQEDHIQQ AHEQNFPSIY GNNSINEQAV DQVTDWRVLD 300 KFVASQLSQE DVVKENNHPN ASNNIFNTSS IHAPNIFVRH LNKQDTSVPE NASTSTSSCQ 360 IDLWK

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MNTFTHVPPG FRFHPTDEEL VDYYLRKKVN SRRIDVDVIK DVDLYKIEPW DLQELCRIGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GTPQASIEEG WVVCRVFKKR LPTMRKVSEH ESVCWYDDQV  180
AFMHDLDSPK QNSQPDLGYQ FPYPCKKEID LQYQIPHDHF LQLPLLQSPK LLQSAPTISC  240
NSISAAYGLD INQASTIQSS TLTQEDHIQQ AHEQNFPSIY GNNSINEQAV DQVTDWRVLD  300
KFVASQLSQE DVVKENNHPN ASNNIFNTSS IHAPNIFVRH LNKQDTSVPE NASTSTSSCQ  360
IDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-50	6	160	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ215852	0.0	HQ215852.1 Populus trichocarpa wood-associated NAC domain transcription factor 3B (WND3B) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011029951.1	0.0	PREDICTED: NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-142	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	F1T111	0.0	F1T111_POPTR; Transcription factor
STRING	POPTR_0012s14660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-120	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]