PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006967.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 720aa    MW: 81591.2 Da    PI: 6.2408
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006967.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.15.1e-1758142289
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                  + ++YAk +GF+ r ++s+k+k nge    ++vC+keg+++++ k+    +  r + r gC+  +  ++++dg+w+++k++l+H He+
  CCG006967.1  58 YLQSYAKAIGFQWRYRTSRKNKSNGERCGVRMVCTKEGTNKPRGKS---PKYFRLSGREGCNVAMSSSLQSDGRWKISKIHLQHCHEI 142
                  5689***************************************999...88999********************************97 PP

2FAR134.47e-11194271290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  f  +YAk+vGF+ ++++s+k k++g++    +vCsk+ +r++ ++           +  gC+ +l  +++kdg+w+++k++l H He+ 
  CCG006967.1 194 FLFSYAKKVGFQWSIRTSRKDKNSGKTCGICMVCSKSKRRKQPNS-----------EGEGCDVSLCSTLQKDGQWKINKIHLRHCHEMD 271
                  6668*******************************9877666544...........589****************************96 PP

3FAR146.99e-15349426390
         FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   ++YAk vGF+ rk++s+k++++gei   ++vC+kegkr +             + + gC   ++ +++k g+w+++k++leH+He+ 
  CCG006967.1 349 LCSYAKAVGFEWRKRTSRKNENSGEICGVRMVCNKEGKRGSLGP----------SMKKGCPVAVNSTLQKGGRWRINKINLEHSHEID 426
                  579************************************99765..........5999***************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1358142IPR004330FAR1 DNA binding domain
PfamPF031016.9E-7194271IPR004330FAR1 DNA binding domain
PfamPF031014.4E-11348426IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MDELLRLSIG GAANSDVNIS SGEAAGPTSL PADGVDRNLL QPPYDGQTFG SLEEMVQYLQ  60
SYAKAIGFQW RYRTSRKNKS NGERCGVRMV CTKEGTNKPR GKSPKYFRLS GREGCNVAMS  120
SSLQSDGRWK ISKIHLQHCH EIDLNAVPLH MRQHLLELND KSGIEEEEEE NEEDEEGKPY  180
DGQTFCSYAE LIQFLFSYAK KVGFQWSIRT SRKDKNSGKT CGICMVCSKS KRRKQPNSEG  240
EGCDVSLCST LQKDGQWKIN KIHLRHCHEM DPNATPILRR WYLLALNGRL GIEEEEGKEE  300
GEEMEEGEGE TEQEEAGNSS LSNDIDRPSI DPLYNGQTFG SLQELIQYLC SYAKAVGFEW  360
RKRTSRKNEN SGEICGVRMV CNKEGKRGSL GPSMKKGCPV AVNSTLQKGG RWRINKINLE  420
HSHEIDPNVR PFLRRRHRSI PPQLRDPLVS NDRLGIEDEE EREEEEEEEG AVRVALEQPL  480
DSSGDEYDSP SINDAIMEEQ PSFESSFNQQ DAIDERGTTC QNSPDLAGNS GQYWKKLKRD  540
MGKLTTSNSD NIRQLSNMER NVDVLISQYF GDDVNTTLQD VRKLITGHKN KVFHLRSSKK  600
SAQAECKNLY RENPDLSATI DRAKLALQAE ESKLSQLTCE EARIEAAIQN LMAKKQSVLS  660
QKASAAKNIE KENQKMEELK NTQEKINKAE NSFRKWQKEM SYANSTFISN LMDSKRVLFK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036894.10.0PREDICTED: histone acetyltransferase KAT6B-like
TrEMBLA0A2K2AAK50.0A0A2K2AAK5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s02350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2311534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.12e-14FAR1-related sequence 7