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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG006967.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 720aa MW: 81591.2 Da PI: 6.2408 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.1 | 5.1e-17 | 58 | 142 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 + ++YAk +GF+ r ++s+k+k nge ++vC+keg+++++ k+ + r + r gC+ + ++++dg+w+++k++l+H He+ CCG006967.1 58 YLQSYAKAIGFQWRYRTSRKNKSNGERCGVRMVCTKEGTNKPRGKS---PKYFRLSGREGCNVAMSSSLQSDGRWKISKIHLQHCHEI 142 5689***************************************999...88999********************************97 PP | |||||||
2 | FAR1 | 34.4 | 7e-11 | 194 | 271 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f +YAk+vGF+ ++++s+k k++g++ +vCsk+ +r++ ++ + gC+ +l +++kdg+w+++k++l H He+ CCG006967.1 194 FLFSYAKKVGFQWSIRTSRKDKNSGKTCGICMVCSKSKRRKQPNS-----------EGEGCDVSLCSTLQKDGQWKINKIHLRHCHEMD 271 6668*******************************9877666544...........589****************************96 PP | |||||||
3 | FAR1 | 46.9 | 9e-15 | 349 | 426 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++YAk vGF+ rk++s+k++++gei ++vC+kegkr + + + gC ++ +++k g+w+++k++leH+He+ CCG006967.1 349 LCSYAKAVGFEWRKRTSRKNENSGEICGVRMVCNKEGKRGSLGP----------SMKKGCPVAVNSTLQKGGRWRINKINLEHSHEID 426 579************************************99765..........5999***************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-13 | 58 | 142 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 6.9E-7 | 194 | 271 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 4.4E-11 | 348 | 426 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MDELLRLSIG GAANSDVNIS SGEAAGPTSL PADGVDRNLL QPPYDGQTFG SLEEMVQYLQ 60 SYAKAIGFQW RYRTSRKNKS NGERCGVRMV CTKEGTNKPR GKSPKYFRLS GREGCNVAMS 120 SSLQSDGRWK ISKIHLQHCH EIDLNAVPLH MRQHLLELND KSGIEEEEEE NEEDEEGKPY 180 DGQTFCSYAE LIQFLFSYAK KVGFQWSIRT SRKDKNSGKT CGICMVCSKS KRRKQPNSEG 240 EGCDVSLCST LQKDGQWKIN KIHLRHCHEM DPNATPILRR WYLLALNGRL GIEEEEGKEE 300 GEEMEEGEGE TEQEEAGNSS LSNDIDRPSI DPLYNGQTFG SLQELIQYLC SYAKAVGFEW 360 RKRTSRKNEN SGEICGVRMV CNKEGKRGSL GPSMKKGCPV AVNSTLQKGG RWRINKINLE 420 HSHEIDPNVR PFLRRRHRSI PPQLRDPLVS NDRLGIEDEE EREEEEEEEG AVRVALEQPL 480 DSSGDEYDSP SINDAIMEEQ PSFESSFNQQ DAIDERGTTC QNSPDLAGNS GQYWKKLKRD 540 MGKLTTSNSD NIRQLSNMER NVDVLISQYF GDDVNTTLQD VRKLITGHKN KVFHLRSSKK 600 SAQAECKNLY RENPDLSATI DRAKLALQAE ESKLSQLTCE EARIEAAIQN LMAKKQSVLS 660 QKASAAKNIE KENQKMEELK NTQEKINKAE NSFRKWQKEM SYANSTFISN LMDSKRVLFK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011036894.1 | 0.0 | PREDICTED: histone acetyltransferase KAT6B-like | ||||
TrEMBL | A0A2K2AAK5 | 0.0 | A0A2K2AAK5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s02350.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23115 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 2e-14 | FAR1-related sequence 7 |