PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG006887.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NF-YC | ||||||||
Protein Properties | Length: 250aa MW: 28086.8 Da PI: 6.3416 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.2 | 1.6e-55 | 69 | 172 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql+sfw++q i+k+tdfknh+lPlarikki+kadedv+misaeaPv++s+ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi CCG006887.1 69 QLQSFWANQykeIDKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFSRACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 166 89******999999************************************************************************************ PP NF-YC 96 vprdel 101 vpr++l CCG006887.1 167 VPREDL 172 ***987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.55E-32 | 64 | 163 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-21 | 91 | 154 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-37 | 92 | 169 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEQGHGQPPA IVSSTSQLQY GTSPYQPNQM LAASNPGSVT GQPVGAQLAQ HQLAYQQIHQ 60 QQEQQLQQQL QSFWANQYKE IDKVTDFKNH SLPLARIKKI MKADEDVRMI SAEAPVIFSR 120 ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDEVLASI 180 PRGTMPVGGP VDALSYCYMP PQHAPQVGAP GMIMGKHVTD PAMYAQQSHP YMAQHMWPQG 240 SEQQQSPSEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-61 | 77 | 169 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 147 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011036760.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X1 | ||||
Refseq | XP_011036761.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X2 | ||||
Refseq | XP_011036762.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X1 | ||||
Refseq | XP_011036763.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X1 | ||||
Swissprot | Q8L4B2 | 7e-88 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A2K2AB64 | 0.0 | A0A2K2AB64_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s03790.1 | 1e-180 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 8e-84 | nuclear factor Y, subunit C9 |