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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG006863.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 315aa MW: 35827.4 Da PI: 4.6697 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.1 | 6e-15 | 112 | 160 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 ykGVr+++ +g++ AeIrd + + r +lg++ taeeAa+a+ + ++++ CCG006863.1 112 IYKGVRRRP-WGKYSAEIRDpF----LKIRLWLGTYTTAEEAAAAYKKKKEEFD 160 69*******.**********44....25******************99998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.13E-12 | 111 | 140 | No hit | No description |
PROSITE profile | PS51032 | 17.965 | 112 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-15 | 112 | 160 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-7 | 112 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-19 | 112 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-13 | 112 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-9 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-9 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MPGLRRPILD QDRIFDQEKQ KKPAMKSNLK AARKVRIICH DPEATDSSSD EDEEYFDRCN 60 RWKQFIREIT LPVFPSKSIL EGPSQDKTGV CKSNISTSNS LDNIRPRRSS TIYKGVRRRP 120 WGKYSAEIRD PFLKIRLWLG TYTTAEEAAA AYKKKKEEFD KKMALERANN LHVDTKVVSE 180 EFDGLCSHPS PLSVLDVSTM TSLGHGLESN VEMVAKECNM ESSIKDESCV EMIEDGILDL 240 WEERTLSPSV SQELLGFDQQ CQMGQFFNGF INGEDFCMCD NTEPVSSPMD GVMDLPDIEL 300 ETLAFVDETL NFAHQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 33 | KKPAMKSNLKAARK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213017 | 0.0 | AC213017.1 Populus trichocarpa clone POP051-F14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011013959.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF073-like | ||||
TrEMBL | A0A2K1XID2 | 0.0 | A0A2K1XID2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s06470.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13451 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25890.2 | 3e-14 | ERF family protein |