PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

CCG006701.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GATA

Protein Properties

Length: 277aa MW: 30195.3 Da PI: 6.3401

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006701.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.2	4e-17	189	225	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt + Tp++Rrgp+g+++LCnaCGl+++ +g+ CCG006701.1 189 CTHCGTNSksTPMMRRGPSGPRSLCNACGLFWANRGT 225 *****99**********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06203	1.0E-15	121	163	IPR010402	CCT domain
PROSITE profile	PS51017	12.451	121	163	IPR010402	CCT domain
PROSITE profile	PS50114	11.319	183	243	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.3E-16	183	236	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	6.4E-16	183	236	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.24E-12	185	236	No hit	No description
CDD	cd00202	3.97E-16	188	233	No hit	No description
PROSITE pattern	PS00344	0	189	216	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	9.0E-15	189	225	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MYTHSQPMNV HNQIASPGVD DDRAPADSID HHHHIHYEDG TPTVVDDVSP ESVYVNAGVA 60 ASELGIQPSD CSSQLTLTFR GQVQAVLLLL GGCELTPGLE MTPQNQRGVV DYPARCTQPQ 120 RAASLSRFRQ KRKERCFDKK VRYGVRQEVA LRMQRNKGQF TSAKKSEGGY GWDGVQDSGL 180 DDSQQETSCT HCGTNSKSTP MMRRGPSGPR SLCNACGLFW ANRGTLRDLT KKTDHSATLI 240 EQGEAEANDS DSGTAIDTNN NLVTYANGGD TALITEH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU277145	3e-70	GU277145.1 Populus balsamifera isolate HAY07 haplotype B GATA type zinc finger protein ZIM gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013924.1	0.0	PREDICTED: GATA transcription factor 25-like
Swissprot	Q9LRH6	1e-76	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A2K2AH48	0.0	A0A2K2AH48_POPTR; Uncharacterized protein
STRING	POPTR_0002s11150.1	1e-166	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	3e-75	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]