PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006580.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 394aa MW: 44658.8 Da PI: 6.6035

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006580.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	184.5	2.5e-57	16	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdee++++yL++kv ++++ + ++i evd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ k+ CCG006580.1 16 LPPGFRFHPTDEEIITHYLTEKVMNSSFCA-SAIGEVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYKGKNC 112 79***********************988.88***********99999*************************************9999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrapkgek++Wvmheyrle CCG006580.1 113 LVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 143 9**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-63	12	167	IPR003441	NAC domain
PROSITE profile	PS51005	58.702	16	167	IPR003441	NAC domain
Pfam	PF02365	5.4E-30	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MEEAIVVNKG DDLIDLPPGF RFHPTDEEII THYLTEKVMN SSFCASAIGE VDLNKCEPWD 60 LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIYKGK NCLVGMKKTL 120 VFYKGRAPKG EKSNWVMHEY RLEGKFSYYS LPKVARDEWV VSRIFHKSTG IKKSSIHDLL 180 RVNSFGDDFL DYSSLPPFMD PLNYNSRPST SNFSGGDNNE FKAMATRSSD GNYFSNTSML 240 NNNQNFVQPP NTNYQAPNSS FHPQIPASNP LYTFQTSPSM PGYLHQGKSS SNSFQNIQDS 300 IFSNNEHTLL RSLARNSYRE ASGLEKQCKV ERFSSNQSMV SLSQDTGLST DVNTTAEISS 360 VVSKQEIGSH DKVFEDLEGP SDGPIADLEC LWDY

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MEEAIVVNKG DDLIDLPPGF RFHPTDEEII THYLTEKVMN SSFCASAIGE VDLNKCEPWD  60
LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIYKGK NCLVGMKKTL  120
VFYKGRAPKG EKSNWVMHEY RLEGKFSYYS LPKVARDEWV VSRIFHKSTG IKKSSIHDLL  180
RVNSFGDDFL DYSSLPPFMD PLNYNSRPST SNFSGGDNNE FKAMATRSSD GNYFSNTSML  240
NNNQNFVQPP NTNYQAPNSS FHPQIPASNP LYTFQTSPSM PGYLHQGKSS SNSFQNIQDS  300
IFSNNEHTLL RSLARNSYRE ASGLEKQCKV ERFSSNQSMV SLSQDTGLST DVNTTAEISS  360
VVSKQEIGSH DKVFEDLEGP SDGPIADLEC LWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	14	173	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-51	14	173	18	174	NAC domain-containing protein 19
3swm_B	1e-51	14	173	18	174	NAC domain-containing protein 19
3swm_C	1e-51	14	173	18	174	NAC domain-containing protein 19
3swm_D	1e-51	14	173	18	174	NAC domain-containing protein 19
3swp_A	1e-51	14	173	18	174	NAC domain-containing protein 19
3swp_B	1e-51	14	173	18	174	NAC domain-containing protein 19
3swp_C	1e-51	14	173	18	174	NAC domain-containing protein 19
3swp_D	1e-51	14	173	18	174	NAC domain-containing protein 19
4dul_A	1e-51	14	173	15	171	NAC domain-containing protein 19
4dul_B	1e-51	14	173	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010999475.1	0.0	PREDICTED: NAC domain-containing protein 100-like isoform X1
Swissprot	Q9FK44	1e-114	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	U5FEC8	0.0	U5FEC8_POPTR; NAC family protein
STRING	POPTR_0019s04710.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-117	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]