PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006578.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 365aa MW: 40805.1 Da PI: 8.4381

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006578.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.8	1e-53	8	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdeel+ +yL+kkv+++++++ ++i++vdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk ++++ CCG006578.1 8 LPPGFRFHPTDEELILHYLRKKVASTPFPV-SIIADVDIYKFDPWDLPAKAALGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKVIMAStit 104 79**************************.89***********988899************************************9999 PP NAM 96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e+vg+kk Lvfykg+ pkg+ktdW+mheyrl CCG006578.1 105 pggviqGQENVGVKKALVFYKGKPPKGVKTDWIMHEYRL 143 9999988888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-64	5	175	IPR003441	NAC domain
PROSITE profile	PS51005	61.709	8	175	IPR003441	NAC domain
Pfam	PF02365	1.4E-27	9	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MKNQQSSLPP GFRFHPTDEE LILHYLRKKV ASTPFPVSII ADVDIYKFDP WDLPAKAALG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKVIMA STITPGGVIQ GQENVGVKKA 120 LVFYKGKPPK GVKTDWIMHE YRLADTPSYS YNKPMKPRDS SMRLDDWVLC RIYKKAHALT 180 SCARAEMSSE HEQEEEEEHF VPENPLPSLK GPMSNKSALM SQKSCSFSNL LDAMDYSLLS 240 SFLADTPFNP TGFESNPALS STASQLDQPP FFSNSNIASG GGGCFLQKLP QLSASAPNNV 300 DNKLKRQLSH IDEAMLHPSK KFMNSCSFTN TNNISTQTDN GQYNFLSQPF LNQQLLLSPH 360 LQFQG

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MKNQQSSLPP GFRFHPTDEE LILHYLRKKV ASTPFPVSII ADVDIYKFDP WDLPAKAALG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKVIMA STITPGGVIQ GQENVGVKKA  120
LVFYKGKPPK GVKTDWIMHE YRLADTPSYS YNKPMKPRDS SMRLDDWVLC RIYKKAHALT  180
SCARAEMSSE HEQEEEEEHF VPENPLPSLK GPMSNKSALM SQKSCSFSNL LDAMDYSLLS  240
SFLADTPFNP TGFESNPALS STASQLDQPP FFSNSNIASG GGGCFLQKLP QLSASAPNNV  300
DNKLKRQLSH IDEAMLHPSK KFMNSCSFTN TNNISTQTDN GQYNFLSQPF LNQQLLLSPH  360
LQFQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-72	5	175	14	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-72	5	175	14	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-72	5	175	14	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-72	5	175	14	165	NO APICAL MERISTEM PROTEIN
3swm_A	6e-72	5	175	17	168	NAC domain-containing protein 19
3swm_B	6e-72	5	175	17	168	NAC domain-containing protein 19
3swm_C	6e-72	5	175	17	168	NAC domain-containing protein 19
3swm_D	6e-72	5	175	17	168	NAC domain-containing protein 19
3swp_A	6e-72	5	175	17	168	NAC domain-containing protein 19
3swp_B	6e-72	5	175	17	168	NAC domain-containing protein 19
3swp_C	6e-72	5	175	17	168	NAC domain-containing protein 19
3swp_D	6e-72	5	175	17	168	NAC domain-containing protein 19
4dul_A	5e-72	5	175	14	165	NAC domain-containing protein 19
4dul_B	5e-72	5	175	14	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00333	DAP	Transfer from AT3G04070	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010999473.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	Q84TD6	1e-119	NAC47_ARATH; NAC transcription factor 47
TrEMBL	B9IPL8	0.0	B9IPL8_POPTR; Uncharacterized protein
STRING	POPTR_0019s04690.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6621	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-117	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]