PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006492.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 300aa    MW: 31736 Da    PI: 5.9772
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006492.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.7e-10149193554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+      +K + a++L + v+Y+k L
  CCG006492.1 149 HSIAERLRRERIAERIRALQELVPSV-----TKTDRAAMLDEIVDYVKFL 193
                  99***********************8.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-15142203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.361144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14146203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7149193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MANNPTEPPT DDFLQEILGM PAFASAEAGL VGTDAGLAGA AAAQASMMLQ LSSGDGSGHI  60
SDLGGGPGGG SAGFHGFPLG LSLEQGKGGF LKPEEASGSG KRFRDEIVDG RAKNVFHGQP  120
MPTTVAIVPH PPAMRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL VPSVTKTDRA  180
AMLDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTDIPL SSVEDETGEG GRNQPAWEKW  240
SNDGTERQVA KLMEENVGAA MQFLQSKALC IMPISLATAI YHTQPPDTTT IVKPETNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042433.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-129UNE12_ARATH; Transcription factor UNE12
TrEMBLU5GGP30.0U5GGP3_POPTR; BHLH family protein
STRINGPOPTR_0005s23930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-102bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]