PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG006492.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 300aa MW: 31736 Da PI: 5.9772 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.3 | 3.7e-10 | 149 | 193 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ +K + a++L + v+Y+k L CCG006492.1 149 HSIAERLRRERIAERIRALQELVPSV-----TKTDRAAMLDEIVDYVKFL 193 99***********************8.....7****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.98E-15 | 142 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.361 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 146 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-7 | 149 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-11 | 150 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MANNPTEPPT DDFLQEILGM PAFASAEAGL VGTDAGLAGA AAAQASMMLQ LSSGDGSGHI 60 SDLGGGPGGG SAGFHGFPLG LSLEQGKGGF LKPEEASGSG KRFRDEIVDG RAKNVFHGQP 120 MPTTVAIVPH PPAMRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL VPSVTKTDRA 180 AMLDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTDIPL SSVEDETGEG GRNQPAWEKW 240 SNDGTERQVA KLMEENVGAA MQFLQSKALC IMPISLATAI YHTQPPDTTT IVKPETNPPS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 158 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042433.1 | 0.0 | PREDICTED: transcription factor UNE12 | ||||
Swissprot | O22768 | 1e-129 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | U5GGP3 | 0.0 | U5GGP3_POPTR; BHLH family protein | ||||
STRING | POPTR_0005s23930.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5449 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 1e-102 | bHLH family protein |
Publications ? help Back to Top | |||
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