PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006277.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 351aa MW: 38652.3 Da PI: 9.6494

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006277.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.5	2.6e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ + CCG006277.1 15 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-TIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSnGA 111 79**************************.89***********8888999*********************************998567 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvfy g+ pkg kt+W+mheyrl CCG006277.1 112 QKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 78*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-64	10	177	IPR003441	NAC domain
PROSITE profile	PS51005	62.015	15	177	IPR003441	NAC domain
Pfam	PF02365	5.0E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MEGTISSSGS QHPQLPPGFR FHPTDEELVV HYLKKKAASV PLPVTIIAEI DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG AQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLIENNSSPK PPAADSANKK GGSLRLDDWV LCRIYKKNNS 180 QRPMDQRDRE DSMEGMFAAL QNSSHQNSKP PSASKHTAYA SLLVNEDTFF EGILTGDGIQ 240 NGSISQLPSS SSKPNMSLAP VSTNTFTATR TLPPHQYWND ATGSPVGLAN SSGKRFHGEL 300 NSGITGTQED NTSFVSMLNQ LPQSTPLVHP STLLDGVLRQ PFQLSSLNWN S

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MEGTISSSGS QHPQLPPGFR FHPTDEELVV HYLKKKAASV PLPVTIIAEI DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG AQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLIENNSSPK PPAADSANKK GGSLRLDDWV LCRIYKKNNS  180
QRPMDQRDRE DSMEGMFAAL QNSSHQNSKP PSASKHTAYA SLLVNEDTFF EGILTGDGIQ  240
NGSISQLPSS SSKPNMSLAP VSTNTFTATR TLPPHQYWND ATGSPVGLAN SSGKRFHGEL  300
NSGITGTQED NTSFVSMLNQ LPQSTPLVHP STLLDGVLRQ PFQLSSLNWN S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-77	15	180	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-77	15	180	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-77	15	180	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-77	15	180	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-77	15	180	20	171	NAC domain-containing protein 19
3swm_B	2e-77	15	180	20	171	NAC domain-containing protein 19
3swm_C	2e-77	15	180	20	171	NAC domain-containing protein 19
3swm_D	2e-77	15	180	20	171	NAC domain-containing protein 19
3swp_A	2e-77	15	180	20	171	NAC domain-containing protein 19
3swp_B	2e-77	15	180	20	171	NAC domain-containing protein 19
3swp_C	2e-77	15	180	20	171	NAC domain-containing protein 19
3swp_D	2e-77	15	180	20	171	NAC domain-containing protein 19
4dul_A	2e-77	15	180	17	168	NAC domain-containing protein 19
4dul_B	2e-77	15	180	17	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011027905.1	0.0	PREDICTED: NAC transcription factor 25-like
Swissprot	Q8GY42	1e-114	NAC25_ARATH; NAC transcription factor 25
TrEMBL	A0A2K2API5	0.0	A0A2K2API5_POPTR; Uncharacterized protein
STRING	POPTR_0004s03820.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1623	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-116	NAC domain containing protein 25