PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006191.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 311aa    MW: 35247.5 Da    PI: 7.6979
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006191.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.12.5e-34612011128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk 84 
                  lp+G++F+Ptd+e++ e+L++kv +++      ++++   i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + +W+
  CCG006191.1  61 LPAGVKFDPTDQEIL-EHLEAKVLSDRrklhplIDEFIPtIEGEnGICYSHPEKLP-GVSNDGQVRHFFHRPSKAYTTGTRKRRKVHtdedgsETRWH 156
                  799***********9.99****999996665443333333665557**********.666777888******************744446555788** PP

          NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  +tgk+++v++ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  CCG006191.1 157 KTGKTRPVFA-GGTVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 201
                  **********.99************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-3954220IPR003441NAC domain
PROSITE profilePS5100534.14461220IPR003441NAC domain
PfamPF023651.7E-1562201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTWCNNNSED ERVIQLVTSN PKEDTIVAAK TEEIRRITCP SCGHNFEIQD QGGIIHDLPG  60
LPAGVKFDPT DQEILEHLEA KVLSDRRKLH PLIDEFIPTI EGENGICYSH PEKLPGVSND  120
GQVRHFFHRP SKAYTTGTRK RRKVHTDEDG SETRWHKTGK TRPVFAGGTV KGFKKILVLY  180
TNYGRQRKPE KTNWVMHQYH LGNNEDEKDG ELVVSKVFFQ TQPRQCSSSI KDSIDNKSTN  240
QSGDIDNIHP LAKNSTGLLE FYNPPFMSYE HSNHSSEIPP QFLPNLVVQG DGSSYIRLAA  300
ETSKGKLQRK Q
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700140.0KP770014.1 Populus tomentosa NAC transcription factor (Potri.004G049300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027766.10.0PREDICTED: NAC domain-containing protein 8
RefseqXP_011027767.10.0PREDICTED: NAC domain-containing protein 8
RefseqXP_011027768.10.0PREDICTED: NAC domain-containing protein 8
SwissprotO494591e-123NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0F6S3950.0A0A0F6S395_POPTO; NAC transcription factor
STRINGPOPTR_0004s04900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-124NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]