PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006186.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 1145aa    MW: 128963 Da    PI: 8.5297
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006186.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.71.3e-24156257199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae++       +  ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +++e
  CCG006186.1 156 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQ--QRPSQELVAKDLHGSEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDGE 249
                  99****************************9743..345679************************************************..449999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++v+r+
  CCG006186.1 250 LRLGVRRA 257
                  *****996 PP
2Auxin_resp117.79.8e-39282363182
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                  +a+a+s++s+F+++YnPras+seF+++++k++k+l++++s+GmR+km+feted++err++G+++g+s+ldp+rWp+SkW++L
  CCG006186.1 282 VANAISMRSAFRIYYNPRASSSEFIIPFNKFLKSLDQSFSAGMRVKMRFETEDAAERRYTGLITGISELDPTRWPGSKWKCL 363
                  689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-42150274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-40151258IPR015300DNA-binding pseudobarrel domain
CDDcd100174.78E-21154256No hitNo description
PfamPF023622.2E-22156257IPR003340B3 DNA binding domain
SMARTSM010192.7E-23156258IPR003340B3 DNA binding domain
PROSITE profilePS5086313.535156258IPR003340B3 DNA binding domain
PfamPF065071.2E-33282363IPR010525Auxin response factor
PfamPF030946.3E-1677261125IPR004326Mlo-related protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1145 aa     Download sequence    Send to blast
MVGMIDLNTT EEDETTPSSG SLSSPSSSSA ASALSASGSG SGSGTSPVCL ELWHACAGPL  60
ISLPKRGSIV VYVPQGHLEQ LPDLPLGIYD LPPHVFCRVV DVKLHAEAAS DDVYAQVSLL  120
PESEEIEQKL REGVFEGDGE EEDVEATVKT TTPHMFCKTL TASDTSTHGG FSVPRRAAED  180
CFPPLDYTQQ RPSQELVAKD LHGSEWKFRH IYRGQPRRHL LTTGWSAFVN KKKLVSGDAV  240
LFLRGEDGEL RLGVRRAAQV KCGPTFPALW NQQLNQSSLA DVANAISMRS AFRIYYNPRA  300
SSSEFIIPFN KFLKSLDQSF SAGMRVKMRF ETEDAAERRY TGLITGISEL DPTRWPGSKW  360
KCLLVRWDDM EANRHSRVSP WEVEPSGSGS GSISSSNNFM APGLKRSRSG LPSLKAEFPI  420
PDGIGASDFR ESSRFQEVLQ GQEIMSFNTH YDDVDGQNQH PSEIRSQFPG SHGSGIAAIG  480
SGIRGSIPTS ENSFNGMGFN ESYRFHKVLQ GQEIFPRSPY RRIPNANKAR ENCVLGLSDG  540
VQRSSSRNGW SNMMQGYNTQ MRPPTQVSSP SSVLMFQHAS NQVSNPTSIF NSSDHEEQTT  600
NTQRWFYPET HGGKFKLSSH SDPGLRGDSQ CSTNPYVLSH EHLQHDISQP VVAQSAFRSS  660
QDMVSCKSSC RLFGFSLTED RHVVNKEDNI ASITSPLNPE SSFLPRVGEQ LHPKPPTINN  720
AVGSSCTKYF NKKRRKYLIQ ALYKIKTELM LLGFISLLMT VLEKPVAKIC IPKSVGETFL  780
PCGSVDSSDW SEQETKCSEQ GKASLMSTEG MTQLRYLIFV LASFHSVSSI LTFGLGMAKM  840
RRWESWEAET RTLDYQFSTD PRRFQLTHQT SFGKRHLRYW NENSVLRWPA CFLRQFYGSV  900
SKVDYFTLRH GFIMAHFDQD NNFDFHRYIR RALDKDFGVV VGISFWIWMF AISFIFFNAH  960
KFYSYYWLPF IPLVMLLLVG TKLQAIITLM CLDSHDKSHV VKGTLLVRPS DHLFWFGRPK  1020
LLLQLLHFIS FQNSFQLAFF TWTWYKFGFR SCFHRRTEDI VIRVVMGVLV HFLCGYVTLP  1080
LYALVTQMGT SMRPAVFTED VIEGLKRWRA KARKNLKNSY SARPSLDTSL SLDSSPSFSL  1140
HSRPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-112313932362Auxin response factor 1
4ldy_B1e-112313932362Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1731735KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027759.10.0PREDICTED: auxin response factor 3-like
TrEMBLA0A3N7G8V60.0A0A3N7G8V6_POPTR; Auxin response factor
STRINGPOPTR_0004s04970.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45763355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein