PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG006147.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 292aa MW: 33100.1 Da PI: 6.7386 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5.1e-18 | 79 | 131 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k CCG006147.1 79 KKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 131 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.2 | 1.7e-41 | 77 | 168 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+ eqvk+LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lk+++dalk++n++L++++++L++el CCG006147.1 77 EKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKKQFDALKADNDALQAQNKKLHAELL 168 69**************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.74E-19 | 69 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-17 | 76 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.08E-16 | 78 | 134 | No hit | No description |
Pfam | PF00046 | 2.9E-15 | 79 | 131 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-19 | 81 | 140 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.1E-16 | 133 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MAFPPHHGFM FHSHEDNDHH PSPSSLNSLP SCPPQLFPGS GGQFLMKRSM SFSGMEKCEE 60 VGHGEDDLSD DGSQIGEKKK RLNLEQVKAL EKSFELGNKL EPERKMQLAK ALGLQPRQIA 120 IWFQNRRARW KTKQLEKDYE VLKKQFDALK ADNDALQAQN KKLHAELLSL KSREPNEVNL 180 KKETEASWSN GSENSCDVNL DISRNPVASS PVSSQLTTKH LFSAPIRPAT ITQLLQGSSR 240 SDLQCLKVDQ LIHQDENFCS MFNGMEEQQG FWPWPEQQHA TFSLNQAQFS NN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011013796.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT7-like | ||||
Swissprot | Q00466 | 7e-91 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | B9IJW4 | 0.0 | B9IJW4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s11800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 1e-82 | homeobox 3 |