PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CCG006034.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 802aa MW: 92418.1 Da PI: 6.4493

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006034.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.9	9.3e-25	51	136	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 Y++YA+ vGFsvrk+ ++sk +g +++r+f+Cskeg+r+++k++ + +++++etrtgC a++ v+++ dg+++vt++e eHnH+ CCG006034.1 51 IYSKYAEVVGFSVRKDWLNRSKVHGLVVSRKFTCSKEGYRRKDKRD-LNVKKRHKETRTGCLAHMIVTRQPDGRYRVTHFEAEHNHD 136 6****************************************999.88899999*****************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-22	51	136	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.5E-28	258	352	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.792	539	575	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MDLNIDQDCC SSNSALVNAS QLSASSKDDA YRGGLLKIGT EFESEEHAYR IYSKYAEVVG 60 FSVRKDWLNR SKVHGLVVSR KFTCSKEGYR RKDKRDLNVK KRHKETRTGC LAHMIVTRQP 120 DGRYRVTHFE AEHNHDNIDP NNADTQLLQR ELFVDQAAKA DLYTGTESSS TYGLMNRRIE 180 VCQSLDYLAM DFENSLRSER IRDMKEGEAG RLLRYFHRQH IENPSFIHGI QVDIDDKVSN 240 IFWADDKMVV DYDHFGDVVC LDTIYRTNKD LQPFVQFIGV NHHNQAIIFA AALLFDDTVE 300 SLKWLFNTFL EAMSGKKPKV ILTDQDAAIV EAVNSILPET SHRICVWQMY QNVLKHLSHS 360 VEDIESFSSD FRSCIYDSNY EEAFVHAWES LLDKYGLQQN EWLRWMFRER EKWSMVYGSN 420 TFFLNMKGSH VVEDLSNNLR SYLNSDQDDA LQIFKIFERV VNEQRVKEKH ANDEMTRCMP 480 RLLGNVVLLK HASAIYTPKA FEIFQKEYEK CLNVVVSQCN ENGFLLEYKV KTFGRTQEYT 540 VTINSTDDTV VCNCMKFENV GFLCGHTLKV LDDRNIKMVP SRYILKRWTN YARLGRARNS 600 NDFTAQENPK LVVANRYKDL CRNILKMSAR AAESEDAFQF ALRKLDELIE GVEKILMLKP 660 DEGHGINSSS TIVNGHESEN AELFLNEKAI EDPGEDNRVE GSKERQSDVP DRHQLKNVVG 720 KGCQKKRFQF AQPPSPNTIN GISSPPQACV TTEGPPHSPL LQGVYNFEAN QVVQCKYPLQ 780 NPVGMDHQDN PNMYRQSNFY AD

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MDLNIDQDCC SSNSALVNAS QLSASSKDDA YRGGLLKIGT EFESEEHAYR IYSKYAEVVG  60
FSVRKDWLNR SKVHGLVVSR KFTCSKEGYR RKDKRDLNVK KRHKETRTGC LAHMIVTRQP  120
DGRYRVTHFE AEHNHDNIDP NNADTQLLQR ELFVDQAAKA DLYTGTESSS TYGLMNRRIE  180
VCQSLDYLAM DFENSLRSER IRDMKEGEAG RLLRYFHRQH IENPSFIHGI QVDIDDKVSN  240
IFWADDKMVV DYDHFGDVVC LDTIYRTNKD LQPFVQFIGV NHHNQAIIFA AALLFDDTVE  300
SLKWLFNTFL EAMSGKKPKV ILTDQDAAIV EAVNSILPET SHRICVWQMY QNVLKHLSHS  360
VEDIESFSSD FRSCIYDSNY EEAFVHAWES LLDKYGLQQN EWLRWMFRER EKWSMVYGSN  420
TFFLNMKGSH VVEDLSNNLR SYLNSDQDDA LQIFKIFERV VNEQRVKEKH ANDEMTRCMP  480
RLLGNVVLLK HASAIYTPKA FEIFQKEYEK CLNVVVSQCN ENGFLLEYKV KTFGRTQEYT  540
VTINSTDDTV VCNCMKFENV GFLCGHTLKV LDDRNIKMVP SRYILKRWTN YARLGRARNS  600
NDFTAQENPK LVVANRYKDL CRNILKMSAR AAESEDAFQF ALRKLDELIE GVEKILMLKP  660
DEGHGINSSS TIVNGHESEN AELFLNEKAI EDPGEDNRVE GSKERQSDVP DRHQLKNVVG  720
KGCQKKRFQF AQPPSPNTIN GISSPPQACV TTEGPPHSPL LQGVYNFEAN QVVQCKYPLQ  780
NPVGMDHQDN PNMYRQSNFY AD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041602.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3N7FYC1	0.0	A0A3N7FYC1_POPTR; Uncharacterized protein
STRING	POPTR_0015s13560.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1-related sequence 5