PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005959.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 26527.1 Da PI: 6.5196 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.9 | 0.0001 | 31 | 80 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr + erE+ R+++N+ f L + l + + Ka+iL ++++ +k+L CCG005959.1 31 RRIHKAEREKLKREQLNDLFLDLASALELS----EPNTGKASILCETTRLLKDL 80 788999*********************997....56789999999999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-10 | 28 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.11E-5 | 28 | 85 | No hit | No description |
PROSITE profile | PS50888 | 11.217 | 30 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-6 | 30 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSTGSEPDVT VEEVTGNRSF PAGKSKGKVP RRIHKAEREK LKREQLNDLF LDLASALELS 60 EPNTGKASIL CETTRLLKDL LTQIESLKKD NVALLSESRY VTIEKNELRE ENSVLENQIG 120 KLQGELESRV AVQSTPVLNM PPPEFQQPPH FPGDSFRLPA VDAAAAALQQ TPAVFVVPLH 180 PDHVQGLPMA TSNVRKPHAR YPTAADSWPS QLLGEQQVAR KEVQFSGKDS GICNPGERCH 240 P |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011048693.1 | 1e-178 | PREDICTED: transcription factor bHLH47-like isoform X1 | ||||
Swissprot | Q9SN74 | 1e-57 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | B9ID69 | 1e-167 | B9ID69_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s13260.1 | 1e-168 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8223 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-52 | bHLH family protein |