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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005948.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 287aa MW: 31901.9 Da PI: 4.7289 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113 | 2.1e-35 | 36 | 126 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+++i++d++++++isw+e+g+sf+v++++ f++++Lpk+Fkh+nf+SFvRQLn+YgF+kv ++ weF+++ F+kg+k+ll++i+ CCG005948.1 36 FLTKTFKIVDDHTIDDVISWNEDGSSFIVWNPTLFSRDLLPKFFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRKGEKNLLCEIQ 123 9*****************************************************************99.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k CCG005948.1 124 RRK 126 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.2E-37 | 29 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.5E-55 | 32 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.17E-33 | 33 | 125 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 5.3E-19 | 36 | 59 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-31 | 36 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-19 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 75 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-19 | 87 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MASLLPLEQN SGETPTSSLA PAAAGGETSR SIPTPFLTKT FKIVDDHTID DVISWNEDGS 60 SFIVWNPTLF SRDLLPKFFK HNNFSSFVRQ LNTYGFRKVV PDRWEFSNEC FRKGEKNLLC 120 EIQRRKMVAT VAQVVAAPAA VKVIKTSPNS SSDEQVVIST RSSSPGLSLE LLDENERLRK 180 ENVRLKGELT EMKSLCGNIF SLVSDFENLR EEEEEVRKVL DLLPMKEEGG DGARIFGVEV 240 GVKRGRELSG DMEEEEEDGM QLQLRQPGGG SSDGVKIEVN GSRNGDR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-24 | 21 | 125 | 15 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-24 | 21 | 125 | 15 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-24 | 21 | 125 | 15 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP014006 | 0.0 | KP014006.1 Populus simonii heat shock transcription factor B2a2 (HsfB2a2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011048671.1 | 0.0 | PREDICTED: heat stress transcription factor B-2a-like | ||||
Swissprot | Q9SCW4 | 1e-79 | HFB2A_ARATH; Heat stress transcription factor B-2a | ||||
TrEMBL | A0A0N7DK22 | 1e-175 | A0A0N7DK22_9ROSI; Heat shock transcription factor B2a2 | ||||
STRING | POPTR_0015s13390.1 | 1e-175 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2037 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 2e-76 | heat shock transcription factor B2A |
Publications ? help Back to Top | |||
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