PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005828.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 377aa MW: 42784.1 Da PI: 7.7393 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.1e-13 | 142 | 193 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr l+P++ + ++ + a+i A++++k+L+ CCG005828.1 142 QRMTHIAVERNRRKQMNEYLSVLRALMPES---YVQRGDQASIIGGAINFVKELE 193 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-13 | 140 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.18E-11 | 140 | 195 | No hit | No description |
PROSITE profile | PS50888 | 15.148 | 141 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-15 | 141 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-10 | 142 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-8 | 147 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MALEAAVFQQ DWFGHSSKEL YNLLGGNWSY DFGLDQNEED QDNSCSSYFL ENQTETFLQE 60 DWNSFQPSNS MVPHLNDLHL TCSNNIPSSS DASIDAANGL LSTAPPTSDR HQHLGDSSTM 120 PATRVKRRRS RSKKNKEEIE NQRMTHIAVE RNRRKQMNEY LSVLRALMPE SYVQRGDQAS 180 IIGGAINFVK ELEQKMQVLG ACKKMKENSD GDNQQHVSSL PFSEFFTFPQ YSTSSIHFEN 240 SVGKNEKLHK TQSTIADIEV TMVESHANLK IRSKRRPKQL LKVVSGLHSM RLTVLHLNVT 300 TVDQIVLYSL SVKVEDDCKL TSVDEIATAV YQMLASQKKH TLRIKILNSE KRKGDVSEPH 360 ERETQQKAAM MSSLKKS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 153 | RMTHIAVERNRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215648 | 0.0 | AC215648.1 Populus trichocarpa clone POP036-O24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011048906.1 | 0.0 | PREDICTED: transcription factor bHLH94-like | ||||
Refseq | XP_011048907.1 | 0.0 | PREDICTED: transcription factor bHLH94-like | ||||
TrEMBL | U5GAK1 | 0.0 | U5GAK1_POPTR; BHLH family protein | ||||
STRING | POPTR_0005s04160.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 3e-72 | bHLH family protein |