PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005639.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 269aa    MW: 30015 Da    PI: 8.2429
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005639.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11112159454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  Av+ + +L
  CCG005639.1 112 SKACREKLRRDRLNDKFIELGSILEPG---RTPKTDKAAILVDAVRMVTQL 159
                  6789**********************9...8***************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1399174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.951108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-9112159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12112181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-9114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-7116164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVSPGNAALP LDYDQYINMD AINIPAQDPN FSAFSWPPLV QPHHHHQHHH HQQQQQQQQQ  60
KQQTLNAFAH TATVSCPNFG AEIDGSFGEC DVQKEPCSKK RGRSESCSAS SSKACREKLR  120
RDRLNDKFIE LGSILEPGRT PKTDKAAILV DAVRMVTQLR GEAQKLRDSN SNLQEKIKEL  180
KAEKIELRDE KQRLKAEKEK LEYQLKAMSS QPSFMPAPPA IPAAFATQGQ APGNKLMPFI  240
GYPGVAMWQF LPPAAVDTSQ DHVLHPPVA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1484790.0EF148479.1 Populus trichocarpa x Populus deltoides clone WS01315_M07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048283.10.0PREDICTED: transcription factor ILR3-like
SwissprotQ9FH371e-103ILR3_ARATH; Transcription factor ILR3
TrEMBLU5GUF81e-155U5GUF8_POPTR; BHLH family protein
STRINGPOPTR_0001s44230.11e-155(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2809833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-73bHLH family protein
Publications ? help Back to Top
  1. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  2. Aparicio F,Pallás V
    The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response.
    Mol. Plant Pathol., 2017. 18(2): p. 173-186
    [PMID:26929142]
  3. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  7. Samira R, et al.
    The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis.
    Plant Mol. Biol., 2018. 97(4-5): p. 297-309
    [PMID:29882068]