PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005639.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 269aa MW: 30015 Da PI: 8.2429 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.5 | 3.8e-11 | 112 | 159 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + +K +Ka+iL Av+ + +L CCG005639.1 112 SKACREKLRRDRLNDKFIELGSILEPG---RTPKTDKAAILVDAVRMVTQL 159 6789**********************9...8***************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-13 | 99 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.951 | 108 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-9 | 112 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-12 | 112 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-9 | 114 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.37E-7 | 116 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MVSPGNAALP LDYDQYINMD AINIPAQDPN FSAFSWPPLV QPHHHHQHHH HQQQQQQQQQ 60 KQQTLNAFAH TATVSCPNFG AEIDGSFGEC DVQKEPCSKK RGRSESCSAS SSKACREKLR 120 RDRLNDKFIE LGSILEPGRT PKTDKAAILV DAVRMVTQLR GEAQKLRDSN SNLQEKIKEL 180 KAEKIELRDE KQRLKAEKEK LEYQLKAMSS QPSFMPAPPA IPAAFATQGQ APGNKLMPFI 240 GYPGVAMWQF LPPAAVDTSQ DHVLHPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148479 | 0.0 | EF148479.1 Populus trichocarpa x Populus deltoides clone WS01315_M07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011048283.1 | 0.0 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 1e-103 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | U5GUF8 | 1e-155 | U5GUF8_POPTR; BHLH family protein | ||||
STRING | POPTR_0001s44230.1 | 1e-155 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28098 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-73 | bHLH family protein |