PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

CCG005564.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 691aa MW: 80416.4 Da PI: 6.2816

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005564.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	4e-22	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk+t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel CCG005564.1 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKSTAEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNHELL 159 59******************8888.***************************************99877789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-20	68	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.7E-19	291	383	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.225	563	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.4E-5	564	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0012	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MTSVPSKNIW IKRQQCPCGD WKCYVTCEGD VEETSVASQL EKNETFQSDS MVSPYVGMVF 60 KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKSTAEHHRD 120 RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIQEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKIVQEN DALLTEKREN 240 DSMELLEACK VTKEMDGDFV YDFTTDENDK VENIAWSYGD SVRAYTLFGD VVYFDTSYRS 300 ITYGMLLGVW LGIDNNGKTI FFGCVLLQDE TARSFAWALQ AFVHLMKGKC PQTILTDLEL 360 GLKDAVRREL PSTRHAISIW NIQPKISSWF FLSLGARYPE FKSMFDDLYH AENADDFEHR 420 WSQMVSMFGF GSDKHIALLY SLRASWASSY MRGYFLARMA TSAYLKSVES FLKAICCAQT 480 CLRSFFEQVG SSSNFQNQLR QEMQYMLTKT CMPIEEHARN FLTPFAFNDF QHELVLSMQC 540 ALSEMPDGSY LVHHYKKMDV ERFVIWIPED EQIHCTCKEF ESSGMLCRHT LRVFILKNYF 600 QLPEKYYLSR WRRESSLVFY DNQDTQTNDD GWFQEFQSLT ETLLTESSIT KERSDYVHRE 660 LPKELKRLIS EVRKMPESDG VAMDLTLSPS S

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MTSVPSKNIW IKRQQCPCGD WKCYVTCEGD VEETSVASQL EKNETFQSDS MVSPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKSTAEHHRD  120
RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIQEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKIVQEN DALLTEKREN  240
DSMELLEACK VTKEMDGDFV YDFTTDENDK VENIAWSYGD SVRAYTLFGD VVYFDTSYRS  300
ITYGMLLGVW LGIDNNGKTI FFGCVLLQDE TARSFAWALQ AFVHLMKGKC PQTILTDLEL  360
GLKDAVRREL PSTRHAISIW NIQPKISSWF FLSLGARYPE FKSMFDDLYH AENADDFEHR  420
WSQMVSMFGF GSDKHIALLY SLRASWASSY MRGYFLARMA TSAYLKSVES FLKAICCAQT  480
CLRSFFEQVG SSSNFQNQLR QEMQYMLTKT CMPIEEHARN FLTPFAFNDF QHELVLSMQC  540
ALSEMPDGSY LVHHYKKMDV ERFVIWIPED EQIHCTCKEF ESSGMLCRHT LRVFILKNYF  600
QLPEKYYLSR WRRESSLVFY DNQDTQTNDD GWFQEFQSLT ETLLTESSIT KERSDYVHRE  660
LPKELKRLIS EVRKMPESDG VAMDLTLSPS S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006373590.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443543.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443544.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443545.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443546.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443547.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_024443549.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A3N7G1P2	0.0	A0A3N7G1P2_POPTR; Uncharacterized protein
STRING	EOY28958	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]