PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG005514.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 316aa MW: 34073.6 Da PI: 6.6744

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005514.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.2e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPk+il++m+vkgLtl h+kSHLQkYRl CCG005514.1 45 KPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-31	42	100	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.643	42	102	IPR017930	Myb domain
TIGRFAMs	TIGR01557	8.1E-25	45	100	IPR006447	Myb domain, plants
SuperFamily	SSF46689	8.6E-17	45	101	IPR009057	Homeodomain-like
Pfam	PF00249	6.1E-8	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-15	143	188	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MLECRGVGIG GMIMEEMHQN QSGIGIGIGL GMQGGAQVVL TSDPKPRLRW TADLHQRFVD 60 AVSQLGGPNK ATPKAILRTM NVKGLTLFHL KSHLQKYRLG KQSGKDMSDT FKDGLSGSYL 120 LENPCTGNSS LNMTASDVNE GYEVKEALRA QMEVQSKLHL QVEAEKHLHI RLDAERRYLA 180 MLERACKMLA DQFIGAAVID TDSQKGVGTK TTRIASRDPL GFYSLQTSEV AEVHGPEDVL 240 PGLHHQGADC STESCLTSNE SPGGLNLEGS PAGGKKGMLS LESATSLIWG ETRMGNAEVN 300 ATQVNSYGAS LYGIWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011040092.1	0.0	PREDICTED: uncharacterized protein LOC105136440
Swissprot	Q94A57	6e-60	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	U5FM90	0.0	U5FM90_POPTR; G2-like family protein
STRING	POPTR_0016s00320.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-61	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]