PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005481.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 434aa MW: 48246.5 Da PI: 4.7248 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144 | 8.3e-45 | 40 | 166 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 ppG+rF+P+d+el+++yL k+ +++l+ + i+ev +yk++P++L + + ++ee+ewyf ++rd+ky++g+r+nra+ +gyWkatg d+++++ ++ CCG005481.1 40 PPGYRFKPQDQELISCYLLCKIWNRPLPR-SGIHEVTLYKYNPETLAEnyEPYGEEEEWYFLTPRDRKYPNGDRPNRAAGDGYWKATGADTDITN-GN 135 9*************************999.67**************84235556889**************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g kktLvfy+g+ap g kt+W+mheyr+ CCG005481.1 136 QVIGSKKTLVFYRGKAPGGAKTNWIMHEYRA 166 9****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-54 | 36 | 193 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.177 | 39 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-23 | 40 | 165 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MEDQRRGAGL TNPVTNSSIT YPSHAQVGVN PGLVQEDQYP PGYRFKPQDQ ELISCYLLCK 60 IWNRPLPRSG IHEVTLYKYN PETLAENYEP YGEEEEWYFL TPRDRKYPNG DRPNRAAGDG 120 YWKATGADTD ITNGNQVIGS KKTLVFYRGK APGGAKTNWI MHEYRASNSD GAPKRKNDGM 180 RLDEWVLCRI RNKNDSSPRI TRINGLEDDE IEDQPSENNG NLVPQEVVVP SISEYHNPGS 240 QLGYLDTSYG NSVSAFPQNS RNGLVAGVSQ NHAVYSRNTV TGNFNPGSQM GYLDSYGNSA 300 SAYLQNSQNG LVAGVSQDYA VTSVPTVTGN YNPVSQMGYL DRYGNFASAY LHNSQNGLAR 360 VSQDNALPRI PQTTNLQLDQ SSSYVQKTIL DYEISSFQFG DGGNNDFGEN DDDLFGLDYI 420 FPPSTSSDDR NDHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-50 | 40 | 199 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-50 | 40 | 199 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-50 | 40 | 199 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-50 | 40 | 199 | 18 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-50 | 40 | 197 | 21 | 172 | NAC domain-containing protein 19 |
3swm_B | 8e-50 | 40 | 197 | 21 | 172 | NAC domain-containing protein 19 |
3swm_C | 8e-50 | 40 | 197 | 21 | 172 | NAC domain-containing protein 19 |
3swm_D | 8e-50 | 40 | 197 | 21 | 172 | NAC domain-containing protein 19 |
3swp_A | 8e-50 | 40 | 197 | 21 | 172 | NAC domain-containing protein 19 |
3swp_B | 8e-50 | 40 | 197 | 21 | 172 | NAC domain-containing protein 19 |
3swp_C | 8e-50 | 40 | 197 | 21 | 172 | NAC domain-containing protein 19 |
3swp_D | 8e-50 | 40 | 197 | 21 | 172 | NAC domain-containing protein 19 |
4dul_A | 7e-50 | 40 | 199 | 18 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-50 | 40 | 199 | 18 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043997.1 | 0.0 | PREDICTED: NAC domain-containing protein 55-like | ||||
TrEMBL | B9IM14 | 0.0 | B9IM14_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s10310.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28096 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 6e-52 | NAC-like, activated by AP3/PI |