PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005358.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 123aa MW: 14232.5 Da PI: 9.0739 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 66.4 | 4.5e-21 | 24 | 79 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++W+KYGqK +k+ r+Y+rC ++C++kk+ e s+ p+ + i+Yeg+H h CCG005358.1 24 EDGFEWKKYGQKFIKNIGKFRGYFRCQKRNCMAKKRAEWSS--PENLRIVYEGSHSHA 79 7**************************************99..9*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-20 | 17 | 79 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.778 | 18 | 81 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-19 | 20 | 79 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-19 | 23 | 80 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-19 | 24 | 78 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
TEEDKEEQQQ QHTDRGRRRL VLPEDGFEWK KYGQKFIKNI GKFRGYFRCQ KRNCMAKKRA 60 EWSSPENLRI VYEGSHSHAS STQDYSSASS QGTPPSSAAN QYNLYTQLFG NQPASSTHDQ 120 DHT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011048161.1 | 4e-90 | PREDICTED: WRKY transcription factor 44-like isoform X1 | ||||
TrEMBL | U5GSI9 | 4e-73 | U5GSI9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s03970.1 | 7e-74 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18950 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 2e-11 | WRKY DNA-binding protein 57 |