PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG005300.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 389aa MW: 44699.8 Da PI: 6.3792

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005300.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.2	1.6e-49	35	160	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrF+Pt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++++ CCG005300.1 35 MPGFRFRPTEEELIEFYLRRKVEGKHFNV-ELITFLDLYSYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRAENSRS 131 69*************************.89***********8778899**************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+g+apkg +t+W+m+eyrl CCG005300.1 132 IGLKKTLVFYSGKAPKGIRTSWIMNEYRL 160 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-54	34	180	IPR003441	NAC domain
PROSITE profile	PS51005	54.093	34	181	IPR003441	NAC domain
Pfam	PF02365	1.6E-24	36	160	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MAIAATMSHN DENNNSNDNT NNIDDDDDHE HDMIMPGFRF RPTEEELIEF YLRRKVEGKH 60 FNVELITFLD LYSYDPWELP ALAAIGEKEW FFYVPRDRKY RNGDRPNRVT TSGYWKATGA 120 DRMIRAENSR SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PQHETERYQK AEISLCCVYK 180 RAGIEDHPSL PRSIPSRASS SRGTQSDKKH QSHVTVKGFQ PFLGQSSQQI EMEKMRETDA 240 SGSSDVTTAL GLSQHNINAY HPISTSLELP ASVEEGMFLN QTKQAASSFL VPNCPNLFTV 300 TSSVSSNPVY DDLHRLINYQ QADIGQQQQQ QQFYLLQQHQ PSQLSSMAPQ SQSLPFNMLP 360 NLLPTTFPDR LWDWNQMPES NRDYNNPFK

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MAIAATMSHN DENNNSNDNT NNIDDDDDHE HDMIMPGFRF RPTEEELIEF YLRRKVEGKH  60
FNVELITFLD LYSYDPWELP ALAAIGEKEW FFYVPRDRKY RNGDRPNRVT TSGYWKATGA  120
DRMIRAENSR SIGLKKTLVF YSGKAPKGIR TSWIMNEYRL PQHETERYQK AEISLCCVYK  180
RAGIEDHPSL PRSIPSRASS SRGTQSDKKH QSHVTVKGFQ PFLGQSSQQI EMEKMRETDA  240
SGSSDVTTAL GLSQHNINAY HPISTSLELP ASVEEGMFLN QTKQAASSFL VPNCPNLFTV  300
TSSVSSNPVY DDLHRLINYQ QADIGQQQQQ QQFYLLQQHQ PSQLSSMAPQ SQSLPFNMLP  360
NLLPTTFPDR LWDWNQMPES NRDYNNPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-53	22	181	5	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-53	22	181	5	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-53	22	181	5	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-53	22	181	5	165	NO APICAL MERISTEM PROTEIN
3swm_A	6e-53	22	181	8	168	NAC domain-containing protein 19
3swm_B	6e-53	22	181	8	168	NAC domain-containing protein 19
3swm_C	6e-53	22	181	8	168	NAC domain-containing protein 19
3swm_D	6e-53	22	181	8	168	NAC domain-containing protein 19
3swp_A	6e-53	22	181	8	168	NAC domain-containing protein 19
3swp_B	6e-53	22	181	8	168	NAC domain-containing protein 19
3swp_C	6e-53	22	181	8	168	NAC domain-containing protein 19
3swp_D	6e-53	22	181	8	168	NAC domain-containing protein 19
4dul_A	5e-53	22	181	5	165	NAC domain-containing protein 19
4dul_B	5e-53	22	181	5	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605191	1e-153	KR605191.1 Manihot esculenta NAC transcription factors 53 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028443.1	0.0	PREDICTED: NAC domain-containing protein 72
Refseq	XP_011028444.1	0.0	PREDICTED: NAC domain-containing protein 72
Swissprot	Q9ZVP8	1e-109	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2K2AZ32	0.0	A0A2K2AZ32_POPTR; Uncharacterized protein
STRING	POPTR_0004s23970.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7203	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-102	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]