PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005285.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 296aa    MW: 32507.6 Da    PI: 8.5931
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005285.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1018.5e-3275132260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  + vrY+eClkNhAas+Gg+a+DGCgEfmps geeg++ al+C+AC+CHRnFHR+e e e
  CCG005285.1  75 KMVRYRECLKNHAASMGGNATDGCGEFMPS-GEEGSIGALTCSACNCHRNFHRKEIEGE 132
                  679**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-2577132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.8E-2977129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.8E-3178129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.01479128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.4E-30215284IPR009057Homeodomain-like
SuperFamilySSF466891.17E-18220283IPR009057Homeodomain-like
TIGRFAMsTIGR015658.7E-27222278IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MELSSHEGGI PIPLNSTFGG SHGHGHGHLI HHDHPAVPHN HNNIIPSPAP QIPSSNNGPS  60
ITTASIDDNH VPYKKMVRYR ECLKNHAASM GGNATDGCGE FMPSGEEGSI GALTCSACNC  120
HRNFHRKEIE GEHTSCAGDH CYHNSPHFNR LGRKVVLGHH KSILGPEALG YPTATGTLIP  180
SRASAPHHQM IMSYNMGSLP SESDEQEDGG GVLMARPAQL MKKRFRTKFS QEQKEKMLNF  240
AEKVGWKLQK QEETVVQQFC QEIGVKRRVL KVWMHNNKHS LAKKNPSTTT TTTSNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-242232801875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164100.0AC216410.1 Populus trichocarpa clone POP030-A06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028421.10.0PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S03e-78ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2K2AZ040.0A0A2K2AZ04_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-74homeobox protein 31