PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005276.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 662aa    MW: 73935.3 Da    PI: 6.3978
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005276.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.8e-22128228198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +++e
  CCG005276.2 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGENGE 221
                  99****************************964333..4459************************************************..449999 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+v+r
  CCG005276.2 222 LRVGVRR 228
                  *****97 PP
2Auxin_resp107.51.5e-35254336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha++t++ F+v+Y+Pr+s+seF+v+++k+++  ++k+svGmRfkm+fe+e+++err+sGt+vgv d  ++ W +S WrsLk
  CCG005276.2 254 ASHAIATGTLFSVFYKPRTSRSEFIVSLNKYLEVRNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNISSGWADSDWRSLK 336
                  789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.76E-44118257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-41125243IPR015300DNA-binding pseudobarrel domain
CDDcd100178.33E-21126228No hitNo description
SMARTSM010191.0E-21128230IPR003340B3 DNA binding domain
PfamPF023622.6E-20128228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.279128230IPR003340B3 DNA binding domain
PfamPF065071.3E-33254336IPR010525Auxin response factor
PfamPF023096.5E-7529574IPR033389AUX/IAA domain
PROSITE profilePS5174526.256538631IPR000270PB1 domain
SuperFamilySSF542773.14E-9541615No hitNo description
PfamPF023094.8E-6581628IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MAFAAMNHTS EGNPHAGGCN DALYKELWHA CAGPLVNLPR EGELVYYFPQ GHMEQLEASM  60
HQGMEPQMPL FNLPSKILCK VVNVQRRAEP ETDEVYAQIT LLPEPDQSEV TSPDPPLPEP  120
ERCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA TDLHGNEWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQQTNMPSSV  240
ISSQSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS LNKYLEVRNH KLSVGMRFKM  300
RFEGEEVPER RFSGTIVGVG DNISSGWADS DWRSLKVQWD EPSSIMRPER VSHWELEPLV  360
ATTPSNSQPV QRNKRARPYV IPSPTADLSA LGMWKSPVES SALSYGDSQR GRDLYSSPNF  420
STTAKVNSLG FRGNSQVASV SHNSMHWPNR VESVTDSFAP VVNKDSGERR QGTGIGYKLF  480
GIQLVENSNI EGTSPVVVSG TVVNDHPVLS LEAESDQHSE PEKSCLRSSQ ELQSRQIRSC  540
TKVHMQGVAV GRAVDLTQFK RYEDLLRKLE EMFDIEGELS GSTKKWQVVY TDNEDDMMKV  600
GDDPWNEFCG MVKKIFIYTS EEVKRLSPKI KLLAEEEVKG IGDNVDAAVN TEDRSSTIGP  660
GC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.033591355Auxin response factor 1
4ldw_A0.033591355Auxin response factor 1
4ldw_B0.033591355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1130350.0KM113035.1 Populus davidiana x Populus alba var. pyramidalis auxin response factor 1 family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028402.10.0PREDICTED: auxin response factor 1
RefseqXP_011028403.10.0PREDICTED: auxin response factor 1
RefseqXP_011028404.10.0PREDICTED: auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLB9N0I30.0B9N0I3_POPTR; Auxin response factor
STRINGPOPTR_0003s00890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]