PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 679aa MW: 77994.6 Da PI: 7.6064

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005265.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.1e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++GFs+r ++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k + +w+vt ++++HnHel CCG005265.1 63 EFYSEFAKRCGFSIRHHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSNENKPQRNRKSSRCGCQAYMRISKVTelgAPEWRVTGFDNHHNHELL 156 6************998887735666799************999*****************998887889***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-17	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-18	279	370	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.755	557	590	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.4E-7	561	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.7E-6	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MMSEEAGQML VVYDDPSDQR SLSLDDTSST EESPDETRLS LETPNDAIPY IGQRFSTHDE 60 GYEFYSEFAK RCGFSIRHHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTSN ENKPQRNRKS 120 SRCGCQAYMR ISKVTELGAP EWRVTGFDNH HNHELLEPNQ VRFLPAYRTI SDTDKSRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEDESV DLLRMCRNIK 240 EKDPNFKFEY TLDSDNRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DLPLGIWVGM 300 NNYGMPCFFG CVISREENLR SLSWALKAFL GFMNGKAPQT ILTDQNMCLK DAIAKEMPST 360 KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFELGWRD MVNIFGLHTN 420 RHVANLHALR NLWALPYLRS HFFAGMTAAG HSKSINAFIQ RFLSAQTRLA HFVEQVAVAV 480 DFKDQAAEQQ TMQQNLQNIS LKTGAPMESH AATVLTPYAF SKLQEQLVLA AHYASFQMED 540 GFHVRHHTKD EGGRKVYWVP REGIISCSCN QFEFSGILCR HALRVLSTGN CFQIPERYLP 600 LRWRRINTSS AKLLHSSNDH GERIQLLQSM VSSLITESAK SKERLDIATE QVSILLSRIR 660 DQPVPSQGIR DFTSIHRKL

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MMSEEAGQML VVYDDPSDQR SLSLDDTSST EESPDETRLS LETPNDAIPY IGQRFSTHDE  60
GYEFYSEFAK RCGFSIRHHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTSN ENKPQRNRKS  120
SRCGCQAYMR ISKVTELGAP EWRVTGFDNH HNHELLEPNQ VRFLPAYRTI SDTDKSRILM  180
FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEDESV DLLRMCRNIK  240
EKDPNFKFEY TLDSDNRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DLPLGIWVGM  300
NNYGMPCFFG CVISREENLR SLSWALKAFL GFMNGKAPQT ILTDQNMCLK DAIAKEMPST  360
KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFELGWRD MVNIFGLHTN  420
RHVANLHALR NLWALPYLRS HFFAGMTAAG HSKSINAFIQ RFLSAQTRLA HFVEQVAVAV  480
DFKDQAAEQQ TMQQNLQNIS LKTGAPMESH AATVLTPYAF SKLQEQLVLA AHYASFQMED  540
GFHVRHHTKD EGGRKVYWVP REGIISCSCN QFEFSGILCR HALRVLSTGN CFQIPERYLP  600
LRWRRINTSS AKLLHSSNDH GERIQLLQSM VSSLITESAK SKERLDIATE QVSILLSRIR  660
DQPVPSQGIR DFTSIHRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028383.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Refseq	XP_011028384.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	B9N0G8	0.0	B9N0G8_POPTR; Uncharacterized protein
STRING	POPTR_0004s23620.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]