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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG005149.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 234aa MW: 26472.2 Da PI: 10.5622 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142.5 | 2.5e-44 | 14 | 136 | 1 | 125 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lpp +rFh t+eel+++yL kkv +++++ ++i+evd++k++Pw+Lp+k+ ekewyfFs rd++y+tg r nratk gyWkat kd++++s+ +g CCG005149.1 14 LPPSCRFHLTNEELITYYLLKKVLDRNFTG-KAIAEVDLNKCKPWELPAKM--VEKEWYFFSLRDRNYPTGLRVNRATKVGYWKATRKDRKIHSSkTG 108 699************************999.88***************655..679*************************************98678 PP NAM 98 elvglkktLvfykgrapkgektdWvmhe 125 +lvg+kktLvfykgra kg k++W+mhe CCG005149.1 109 ALVGMKKTLVFYKGRALKGGKSNWIMHE 136 88*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-44 | 10 | 136 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.785 | 14 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-22 | 15 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MESFHHFGDG DAHLPPSCRF HLTNEELITY YLLKKVLDRN FTGKAIAEVD LNKCKPWELP 60 AKMVEKEWYF FSLRDRNYPT GLRVNRATKV GYWKATRKDR KIHSSKTGAL VGMKKTLVFY 120 KGRALKGGKS NWIMHERAAV ELQREVKTSP RKTALTPLSI STQKPAPHLQ SLSLPSLMLP 180 LPLPPQLSMT VTAALTTTTL STSTYPVSPP LQLLLLPLLI TTKNLILLNC LHLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-39 | 14 | 144 | 17 | 147 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-39 | 14 | 144 | 17 | 147 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-39 | 14 | 144 | 17 | 147 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-39 | 14 | 144 | 17 | 147 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-39 | 14 | 144 | 20 | 150 | NAC domain-containing protein 19 |
3swm_B | 1e-39 | 14 | 144 | 20 | 150 | NAC domain-containing protein 19 |
3swm_C | 1e-39 | 14 | 144 | 20 | 150 | NAC domain-containing protein 19 |
3swm_D | 1e-39 | 14 | 144 | 20 | 150 | NAC domain-containing protein 19 |
3swp_A | 1e-39 | 14 | 144 | 20 | 150 | NAC domain-containing protein 19 |
3swp_B | 1e-39 | 14 | 144 | 20 | 150 | NAC domain-containing protein 19 |
3swp_C | 1e-39 | 14 | 144 | 20 | 150 | NAC domain-containing protein 19 |
3swp_D | 1e-39 | 14 | 144 | 20 | 150 | NAC domain-containing protein 19 |
4dul_A | 1e-39 | 14 | 144 | 17 | 147 | NAC domain-containing protein 19 |
4dul_B | 1e-39 | 14 | 144 | 17 | 147 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024439165.1 | 3e-83 | protein CUP-SHAPED COTYLEDON 2-like | ||||
Refseq | XP_024450666.1 | 3e-83 | protein CUP-SHAPED COTYLEDON 2 | ||||
Swissprot | O04017 | 2e-65 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A2K2CAY9 | 6e-82 | A0A2K2CAY9_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A2K2CAZ9 | 6e-82 | A0A2K2CAZ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s40680.1 | 9e-83 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 2e-66 | NAC family protein |