PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005115.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 693aa    MW: 75216.3 Da    PI: 5.4216
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005115.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06262282526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd C +aHg
  CCG005115.1 262 PCPEFRK-GSCRQGDACEYAHG 282
                  8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.54E-856133IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.9E-884138IPR020683Ankyrin repeat-containing domain
CDDcd002048.75E-792159No hitNo description
PROSITE profilePS5008811.96893128IPR002110Ankyrin repeat
PfamPF000231.9E-593127IPR002110Ankyrin repeat
SMARTSM002480.002393125IPR002110Ankyrin repeat
PROSITE profilePS5029712.24993133IPR020683Ankyrin repeat-containing domain
SMARTSM003561.0E-4257283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662262284IPR000571Zinc finger, CCCH-type
SMARTSM0035631292315IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944292316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MFLKVLSVYN LVEKRLCGGD FVMCSGTKRK PTHTGFNMEN EFQKEDGVCY DFSVLLELSA  60
LNDLIGFKKA IEEEGYDVDM PGHVDVNRGY GSDGATALHC AAAGGSSSAP EVARLLLDAS  120
ADPNSVDANG NLPGDLIAPV VKSGSNSRKK TLEIMLKGGT SGEETCVLAD QIADEMDGRE  180
QQEVSTPRVS KDGSEKKEYP IDLTLPDIKN GMYGTDEFRM YTFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYHYSC VPCPEFRKGS CRQGDACEYA HGIFECWLHP AQYRTRLCKD  300
ETGCTRRVCF FAHKPEELRP LYASTGSAVP SPRSYSANGS TFDMSSISPL SLGSSSVLMP  360
STSTPPMTPS GSSSPMGGWT NQSNVVPPAL QLPGSRLKAA LCARDMDLDM ELLGLESHRR  420
RQQLMDEISG LSSPSSWNNG FSTASAFTAS GDQTGDLNRL GGLRPTNLED MFGSLDPSIL  480
PQLQGLSLDG ATTHLQSPTG LQMRQNINQQ LRSSYPTSFS SSPMRTSPSF GMDHSGGAAA  540
AVLSSRSAAF AKRSQSFVER NAVNRHPVFS SPAKVMPPNL SDWGSPDGKL DWGIQGEELN  600
KLRKSASFGF RSDGSSFAPA AASVPATIGE PDVSWVQSLV KDNPPVKPGP LGLEEEQQQQ  660
QEQQLQCHLN IGGSEMLPAW VEQLYIEQEP LVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043783.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2K2C3G10.0A0A2K2C3G1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s25960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-165C3H family protein