PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005045.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 399aa    MW: 44722.8 Da    PI: 5.24
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005045.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.74e-352263511126
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdke.vlskk 96 
                  lp G+rF P+d+elv+eyL kkv+++ l+  + i+ev+iy+++P  L +k+k   + +wyfF++rdkky++g+r++ra+  g+Wk tg++ + v++++
  CCG005045.1 226 LPIGVRFCPNDQELVMEYLMKKVRNEALPK-NRIHEVNIYEHHPAILTEKYKRYAEiHWYFFTTRDKKYPNGTRPSRAVPGGFWKPTGTSATcVFDEN 322
                  699************************999.77**************9666664445*******************************9766266669 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmhey 126
                  ++ +  k+ L fy+ + ++g +t+W m ey
  CCG005045.1 323 KNPIASKTPLDFYESKGKDG-RTEWKMLEY 351
                  999**********8888886.9*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-40223379IPR003441NAC domain
PROSITE profilePS5100538.105226379IPR003441NAC domain
PfamPF023653.7E-17227351IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEENNGLSGT FINNSMMRLV ASIRGSNNND MQFDANILNN GNNNSMQFDE HVLSNGNSNV  60
MQFDENILSN AMQFDTNIFS HAMQFDANLL NNGNGNSNAM RFDENILSNA MQFDANLLNN  120
GNGNSNAMRF DENILSNSIN AMQFDANILS NAMQFDANIL NNGNSNAYIS PGSLVDYQFC  180
SPNKGMVMDC SSSNLINHSG QPQSPGSSSQ FNVDDGDYID PYFFTLPIGV RFCPNDQELV  240
MEYLMKKVRN EALPKNRIHE VNIYEHHPAI LTEKYKRYAE IHWYFFTTRD KKYPNGTRPS  300
RAVPGGFWKP TGTSATCVFD ENKNPIASKT PLDFYESKGK DGRTEWKMLE YFPKCMDIHS  360
SSAGGMRLND CVLCVIYRKG EKKSGAATAN EETKGKLSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-2722437915165NO APICAL MERISTEM PROTEIN
1ut4_B8e-2722437915165NO APICAL MERISTEM PROTEIN
1ut7_A8e-2722437915165NO APICAL MERISTEM PROTEIN
1ut7_B8e-2722437915165NO APICAL MERISTEM PROTEIN
3swm_A1e-2622437918168NAC domain-containing protein 19
3swm_B1e-2622437918168NAC domain-containing protein 19
3swm_C1e-2622437918168NAC domain-containing protein 19
3swm_D1e-2622437918168NAC domain-containing protein 19
3swp_A1e-2622437918168NAC domain-containing protein 19
3swp_B1e-2622437918168NAC domain-containing protein 19
3swp_C1e-2622437918168NAC domain-containing protein 19
3swp_D1e-2622437918168NAC domain-containing protein 19
4dul_A8e-2722437915165NAC domain-containing protein 19
4dul_B8e-2722437915165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033356.17e-89PREDICTED: uncharacterized protein LOC105131874
TrEMBLA0A2K1ZX220.0A0A2K1ZX22_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0006s04990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3925422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-34NAC domain containing protein 47