PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004821.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 283aa    MW: 30481.6 Da    PI: 9.1103
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004821.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19154204255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  CCG004821.1 154 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFATAEDAALAYDRAAYRMRG 204
                  8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.24E-31153212No hitNo description
Gene3DG3DSA:3.30.730.107.5E-32153212IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-23154214IPR016177DNA-binding domain
PfamPF008471.7E-13154204IPR001471AP2/ERF domain
PROSITE profilePS5103223.907154212IPR001471AP2/ERF domain
SMARTSM003804.0E-39154218IPR001471AP2/ERF domain
PRINTSPR003671.5E-10155166IPR001471AP2/ERF domain
PRINTSPR003671.5E-10178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MYGEKFLDQS DYAFLESVRM HLLGEPTSPT TASSRFNPAI TNSAMSTAAA TTPATCTPVP  60
VYCRSTSFGS LYPCLTENWG DLPLKVDDSE DMFLYGGLRT AVTVGWVPSL KTDQFIEPNL  120
PAVKLEPSEN LTISPPRKEA PKADPAVVPS KGKHYRGVRQ RPWGKFAAEI RDPAKNGARV  180
WLGTFATAED AALAYDRAAY RMRGSRALLN FPLRVNSGEP DPVRVTSKRS SPEPSSSVES  240
ASLKRKKVGG SAGTATLVAQ AGMEMRNGIG CQVGTHGEQL LAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-43150219170ATERF1
3gcc_A8e-43150219170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089990.0AC208999.1 Populus trichocarpa clone POP021-B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047596.10.0PREDICTED: ethylene-responsive transcription factor 1A-like
SwissprotO803375e-84EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A2K2BY521e-178A0A2K2BY52_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15390.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-69ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]