PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 543aa    MW: 60472.8 Da    PI: 6.8555
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004800.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.43.5e-121139735
         GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 t TplWR+gp  ++ LCnaCG ++r kg+
  CCG004800.1 11 TGTPLWRNGPPEKPVLCNACGSRWRTKGT 39
                 66********88888***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.1E-81139IPR013088Zinc finger, NHR/GATA-type
SMARTSM004010.00691151IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-61143No hitNo description
PfamPF003205.3E-101139IPR000679Zinc finger, GATA-type
CDDcd002021.05E-101352No hitNo description
PfamPF139192.3E-10281371IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MHCIADNYLP TGTPLWRNGP PEKPVLCNAC GSRWRTKGTL ANYTPLHARA GPDDYDDHRV  60
SRLKIISMNK NREVKLLKRK PNYDHRVTEG VALDYNEGYR KVVDEDTSNR SSSGSAISNS  120
ESCAQYGSAD ASDLTGPAQS VVWDSLVPSR KRTCVNRPKP SPVEKLTKDL YTILHEQQSS  180
CFSGSSEEDL LFDNETPMVS VEIGHGSVLI RHPSSIARDE ESEASSLSVE NKQYPTNEAY  240
SHPVILPVHN ENQSVNMTYP ITVKTKNLSG QGMQQEQLNR DKSPHEKVHI LGSHNSPLCS  300
VDLNDFLNFE EFARHLTNEE QQQLLKYLPP LDTAKLPNSI KSMFDSPQFK ENINCYQQLL  360
SEGVFDLSFL EAKTEDCKTL KRLTLSNLSK SKWVEHYHLL KKCKNSTGKS LVGKGPNPNV  420
VASSNLIGAK RSRDNLSQKF SEAKSMKSPK RIVMKATYEI KELIDNDGSC FSPRSLFALP  480
PDGSSLMLDS LHFVDESSDQ DLLLDIPSNG SFAQAELLYP TNNSFGQQAS TSSSSIYPHL  540
GCP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470260.0EF147026.1 Populus trichocarpa clone WS01226_G08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047566.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-153GAT26_ARATH; GATA transcription factor 26
TrEMBLU5GPN90.0U5GPN9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-156GATA transcription factor 26