PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG004800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 543aa MW: 60472.8 Da PI: 6.8555 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 37.4 | 3.5e-12 | 11 | 39 | 7 | 35 |
GATA 7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35 t TplWR+gp ++ LCnaCG ++r kg+ CCG004800.1 11 TGTPLWRNGPPEKPVLCNACGSRWRTKGT 39 66********88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 3.1E-8 | 11 | 39 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 0.0069 | 11 | 51 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.85E-6 | 11 | 43 | No hit | No description |
Pfam | PF00320 | 5.3E-10 | 11 | 39 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.05E-10 | 13 | 52 | No hit | No description |
Pfam | PF13919 | 2.3E-10 | 281 | 371 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MHCIADNYLP TGTPLWRNGP PEKPVLCNAC GSRWRTKGTL ANYTPLHARA GPDDYDDHRV 60 SRLKIISMNK NREVKLLKRK PNYDHRVTEG VALDYNEGYR KVVDEDTSNR SSSGSAISNS 120 ESCAQYGSAD ASDLTGPAQS VVWDSLVPSR KRTCVNRPKP SPVEKLTKDL YTILHEQQSS 180 CFSGSSEEDL LFDNETPMVS VEIGHGSVLI RHPSSIARDE ESEASSLSVE NKQYPTNEAY 240 SHPVILPVHN ENQSVNMTYP ITVKTKNLSG QGMQQEQLNR DKSPHEKVHI LGSHNSPLCS 300 VDLNDFLNFE EFARHLTNEE QQQLLKYLPP LDTAKLPNSI KSMFDSPQFK ENINCYQQLL 360 SEGVFDLSFL EAKTEDCKTL KRLTLSNLSK SKWVEHYHLL KKCKNSTGKS LVGKGPNPNV 420 VASSNLIGAK RSRDNLSQKF SEAKSMKSPK RIVMKATYEI KELIDNDGSC FSPRSLFALP 480 PDGSSLMLDS LHFVDESSDQ DLLLDIPSNG SFAQAELLYP TNNSFGQQAS TSSSSIYPHL 540 GCP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147026 | 0.0 | EF147026.1 Populus trichocarpa clone WS01226_G08 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011047566.1 | 0.0 | PREDICTED: GATA transcription factor 26-like | ||||
Swissprot | Q8W4H1 | 1e-153 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | U5GPN9 | 0.0 | U5GPN9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s15170.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4424 | 31 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-156 | GATA transcription factor 26 |