PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG004780.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 354aa MW: 40415.2 Da PI: 8.0856

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG004780.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.1	1.8e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++ k+ + ++ewyfFs+r +ky+tg+r+nrat++g+Wkatg+dk + + CCG004780.1 8 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWELQEtcKIGStPQNEWYFFSHRGRKYPTGSRTNRATNAGFWKATGRDKCIRN- 103 69**************************.99**********963433332456*********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++++g++ktLvfy+grap+g+ktdW+mheyrle CCG004780.1 104 TDRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.24E-61	6	159	IPR003441	NAC domain
PROSITE profile	PS51005	58.036	8	159	IPR003441	NAC domain
Pfam	PF02365	8.8E-28	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MATSTGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMEVI REVDLNKMEP WELQETCKIG 60 STPQNEWYFF SHRGRKYPTG SRTNRATNAG FWKATGRDKC IRNTDRKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDGD DAQGNAGEDG WVVCRVFKKK NLFKVSNEGR AASMDSSDQQ 180 LHKLNNQSRA SMYRDSQYLL RQHHNHGSTQ QTFEQNKPEL PLCYHHMETP NQYSLFPSQT 240 LMPTHNPLGY DYSALPSESP VMVKQLMSKA RDCESGSESL RYQACEPGLE VGTCEAPQQM 300 VSGRDDQWAV LVTSHQGNEG SSKGVAFDAA NAPSVHPINQ PTLRGEMDFW GYGK

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MATSTGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMEVI REVDLNKMEP WELQETCKIG  60
STPQNEWYFF SHRGRKYPTG SRTNRATNAG FWKATGRDKC IRNTDRKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDGD DAQGNAGEDG WVVCRVFKKK NLFKVSNEGR AASMDSSDQQ  180
LHKLNNQSRA SMYRDSQYLL RQHHNHGSTQ QTFEQNKPEL PLCYHHMETP NQYSLFPSQT  240
LMPTHNPLGY DYSALPSESP VMVKQLMSKA RDCESGSESL RYQACEPGLE VGTCEAPQQM  300
VSGRDDQWAV LVTSHQGNEG SSKGVAFDAA NAPSVHPINQ PTLRGEMDFW GYGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-52	8	161	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-52	8	161	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-52	8	161	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-52	8	161	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	4e-52	8	161	20	170	NAC domain-containing protein 19
3swm_B	4e-52	8	161	20	170	NAC domain-containing protein 19
3swm_C	4e-52	8	161	20	170	NAC domain-containing protein 19
3swm_D	4e-52	8	161	20	170	NAC domain-containing protein 19
3swp_A	4e-52	8	161	20	170	NAC domain-containing protein 19
3swp_B	4e-52	8	161	20	170	NAC domain-containing protein 19
3swp_C	4e-52	8	161	20	170	NAC domain-containing protein 19
3swp_D	4e-52	8	161	20	170	NAC domain-containing protein 19
4dul_A	3e-52	8	161	17	167	NAC domain-containing protein 19
4dul_B	3e-52	8	161	17	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210382	0.0	AC210382.1 Populus trichocarpa clone POP018-P22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013352.1	0.0	PREDICTED: protein BEARSKIN1-like
Swissprot	Q9SV87	1e-145	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A2K1Y3D9	0.0	A0A2K1Y3D9_POPTR; Uncharacterized protein
STRING	POPTR_0013s09280.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8752	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-148	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]