PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004426.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 746aa    MW: 81106.6 Da    PI: 9.2941
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004426.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.53.9e-1744130191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  ++Yn+YA++vGF + +++s+   ++g+ t   + Cs+ gk++   k+   + + +++++t+Ckak+++ ++ +g++++ +++l+HnHel+p
  CCG004426.1  44 DYYNRYAQRVGFGIMRRSSRCD-DDGRLTYIVLSCSQCGKDRGIPKS---RFQWKQTSKTNCKAKINLVLNPQGQFHICNVVLDHNHELTP 130
                  69**************998887.8999**************999888...88899999******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-1544130IPR004330FAR1 DNA binding domain
SuperFamilySSF1009505.09E-33230377No hitNo description
Gene3DG3DSA:3.40.50.13606.2E-42232371No hitNo description
CDDcd013989.06E-74233446IPR004788Ribose 5-phosphate isomerase, type A
TIGRFAMsTIGR000214.7E-54234449IPR004788Ribose 5-phosphate isomerase, type A
PfamPF060261.8E-44280447IPR004788Ribose 5-phosphate isomerase, type A
SuperFamilySSF754451.44E-18360437No hitNo description
Gene3DG3DSA:3.30.70.2602.7E-22372435No hitNo description
SuperFamilySSF1009501.55E-34500648No hitNo description
HamapMF_0017029.349500727IPR020672Ribose-5-phosphate isomerase, type A, subgroup
Gene3DG3DSA:3.40.50.13606.9E-45504641No hitNo description
TIGRFAMsTIGR000217.4E-59505720IPR004788Ribose 5-phosphate isomerase, type A
CDDcd013981.51E-76505717IPR004788Ribose 5-phosphate isomerase, type A
PfamPF060261.3E-48554719IPR004788Ribose 5-phosphate isomerase, type A
SuperFamilySSF754452.62E-18630706No hitNo description
Gene3DG3DSA:3.30.70.2605.6E-23642705No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009052Biological Processpentose-phosphate shunt, non-oxidative branch
GO:0004751Molecular Functionribose-5-phosphate isomerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MKVSSSDNEK VDEHGVSGVL LNGDGEVETP KIGMVFASQE EVRDYYNRYA QRVGFGIMRR  60
SSRCDDDGRL TYIVLSCSQC GKDRGIPKSR FQWKQTSKTN CKAKINLVLN PQGQFHICNV  120
VLDHNHELTP GKLHPNICKK SKSFRTRKGR EGKEHTGVML RPDFRSIFGE PLGSETALPD  180
SVIQRPSFSN HLLNGDKHLL CSYTGLPTGE TISNRLKRRS PALEVSQNSQ DSLRQALAKR  240
AVALVKSGMV IGLGTGRTLT LVIEEIGKLI QEGKLKEIVA VGTNYQSRIT ARQYGMTAVD  300
PNDVNDIDIA FDVVDEVDIN KNLLKCRGAN HTVQKVIDSM AKVCILLVEH TKVVHRLGNN  360
IPVAVEVLPI AVSSVLRRLI ALGGVPEIRS ASRKDGSVIT DLGNMVVDVS FPSGIQNPAE  420
LEKNINMIPG VVDNGIFSAV ATIVLVVVRD RDYAIPRIVT DPNQIIFGSS HLLTKRSVNR  480
NVSSGSKRRN SVFAIPVLNQ ESTERILARK AVELVKSGMV IGLGSGATIS MVMEELGRLI  540
REGKLKDIIA VGGNYQSRVL ATQFGVTIVD LSGVSKIDIA FDGVDEVDFN KNLLKCGGPA  600
HTMQKVIASV ASECIILVDQ PKVVHRLGSA FPVPVEVLPP ALTPVLKRLA TLGGVPEIRF  660
TSNENGPLFT DLGNMVVDVS FPNGIQNPAE LEKNIKLLPG VVENGIVTGV ATTVLVAVKE  720
RGAVNVMNLE DYVRTVLDRR DGTLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1lk5_A4e-482317201222D-Ribose-5-Phosphate Isomerase
1lk5_B4e-482317201222D-Ribose-5-Phosphate Isomerase
1lk5_C4e-482317201222D-Ribose-5-Phosphate Isomerase
1lk5_D4e-482317201222D-Ribose-5-Phosphate Isomerase
1lk7_A4e-482317201222D-Ribose-5-Phosphate Isomerase
1lk7_B4e-482317201222D-Ribose-5-Phosphate Isomerase
1lk7_C4e-482317201222D-Ribose-5-Phosphate Isomerase
1lk7_D4e-482317201222D-Ribose-5-Phosphate Isomerase
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2779581e-65GU277958.1 Populus balsamifera isolate FRE01 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779591e-65GU277959.1 Populus balsamifera isolate FRE01 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779601e-65GU277960.1 Populus balsamifera isolate GAL12 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779611e-65GU277961.1 Populus balsamifera isolate GAL12 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779621e-65GU277962.1 Populus balsamifera isolate GIL14 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779631e-65GU277963.1 Populus balsamifera isolate GIL14 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779641e-65GU277964.1 Populus balsamifera isolate HAY07 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779651e-65GU277965.1 Populus balsamifera isolate HAY07 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779661e-65GU277966.1 Populus balsamifera isolate INU03 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779671e-65GU277967.1 Populus balsamifera isolate INU03 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779681e-65GU277968.1 Populus balsamifera isolate MGR10 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779691e-65GU277969.1 Populus balsamifera isolate MGR10 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779701e-65GU277970.1 Populus balsamifera isolate NWL07 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779711e-65GU277971.1 Populus balsamifera isolate NWL07 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779721e-65GU277972.1 Populus balsamifera isolate RNA13 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779731e-65GU277973.1 Populus balsamifera isolate RNA13 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779741e-65GU277974.1 Populus balsamifera isolate STO11 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779751e-65GU277975.1 Populus balsamifera isolate STO11 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779761e-65GU277976.1 Populus balsamifera isolate WHR03 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779771e-65GU277977.1 Populus balsamifera isolate WHR03 haplotype B putative pyruvate decarboxylase gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027247.10.0PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic
TrEMBLA0A2K1ZWF00.0A0A2K1ZWF0_POPTR; Uncharacterized protein
STRINGPOPTR_0006s03820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1642057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.23e-11FAR1 family protein