PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004347.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 266aa    MW: 30095.2 Da    PI: 9.825
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004347.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000471712101155
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  rR +++ +++ +L++l+ +      +K + a++L +A  +Ik Lq
  CCG004347.1 171 RRSKKLSDKITTLQKLVSPY-----GKADTASVLLEASLHIKLLQ 210
                  7999**************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-6156229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.362160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-8171222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MLFVCNQFVS GNNKVQRPNL EVSMSMDAKI NVHGTSFYLD SKVFNDGHQL RDGGFCIPYE  60
SLASHQPVAG YQSASSTCSN IPQQSTPLSK RVSITDVQMD FQAMQMRKRS IDELTNLLLQ  120
REPNDLIENK TALSTWKTKK RKKDNSPQEP WNHQARESLS IQEQKLQVPV RRSKKLSDKI  180
TTLQKLVSPY GKADTASVLL EASLHIKLLQ EQIQNLFQML TSSRNSTRPI QQSQETDGEL  240
RDLQSRGLCL VPISFMQKND SAARPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138142KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0295231e-120CT029523.1 Poplar cDNA sequences.
GenBankCT0295241e-120CT029524.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027143.10.0PREDICTED: transcription factor bHLH123-like
TrEMBLA0A3N7FDZ41e-135A0A3N7FDZ4_POPTR; Uncharacterized protein
STRINGPOPTR_0010s21570.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-21bHLH family protein