PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG004342.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 142aa MW: 15761.1 Da PI: 9.4726 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 10 | 32 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H CCG004342.1 10 FECKTCNRQFPSFQALGGHRASH 32 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.36E-9 | 8 | 77 | No hit | No description |
Pfam | PF13912 | 2.1E-13 | 9 | 34 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 10 | 37 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 10 | 32 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 12 | 32 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.4E-10 | 54 | 79 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 55 | 77 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.912 | 55 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MSNISPARVF ECKTCNRQFP SFQALGGHRA SHKKPRLMGG EGSFETQSPA KPKTHECSIC 60 GLEFAIGQAL GGHMRRHRAA LNDQNQVDPL KPPSTDDQKA VPVMKRSTSR RVLSLDLNLT 120 PYENDMELFK LGTTAPMVNC FF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN700523 | 0.0 | JN700523.1 Populus trichocarpa C2H2-type zinc finger protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011027131.1 | 1e-103 | PREDICTED: zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 7e-36 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | G8IEK9 | 3e-98 | G8IEK9_POPTR; C2H2 family protein | ||||
STRING | POPTR_0010s21650.1 | 1e-87 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 3e-38 | C2H2 family protein |