PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG004241.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 234aa MW: 26554.6 Da PI: 5.9102

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG004241.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1e-16	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l + ++ +G g W++ a+ g++Rt+k+c++rw++yl CCG004241.1 15 KGPWTLEEDLILTNHIANHGEGVWNSLAKDAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	45	2.4e-14	68	154	1	46
TSSS-HHHHHHHHHHHHHTTTT..........................................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..........................................tWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ CCG004241.1 68 RGNITPEEQLLIMELHAKWGNRrdsipdlsavliikestvlkvpirtdcslsehdekdadsnaaGWSKIAKHLP-GRTDNEIKNYWRT 154 7999********************************************************************.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-22	7	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.897	10	66	IPR017930	Myb domain
SMART	SM00717	6.9E-13	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-15	15	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.13E-21	15	66	IPR009057	Homeodomain-like
CDD	cd00167	6.12E-10	17	62	No hit	No description
PROSITE profile	PS50090	8.2	63	156	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.3E-20	66	88	IPR009057	Homeodomain-like
SMART	SM00717	9.9E-11	67	158	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.13E-21	128	155	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-7	132	154	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-20	132	160	IPR009057	Homeodomain-like
CDD	cd00167	1.59E-6	133	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MDKTPSNSRD VEIRKGPWTL EEDLILTNHI ANHGEGVWNS LAKDAGLKRT GKSCRLRWLN 60 YLRPDLRRGN ITPEEQLLIM ELHAKWGNRR DSIPDLSAVL IIKESTVLKV PIRTDCSLSE 120 HDEKDADSNA AGWSKIAKHL PGRTDNEIKN YWRTRIQKHI KQAETFAAQV SSETNEHGSN 180 SSQVSSTTEL MVSNYLPSYQ GDVEAFSGAN IPQELNENYW SIEDLWSMQL LNGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-17	12	160	24	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013294.1	1e-133	PREDICTED: myb-related protein 305-like isoform X1
Swissprot	P81391	6e-82	MYB05_ANTMA; Myb-related protein 305
TrEMBL	B9IJM0	1e-118	B9IJM0_POPTR; Uncharacterized protein
STRING	evm.model.supercontig_186.7	1e-98	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3305	34	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	1e-74	myb domain protein 24

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]