PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG004151.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 460aa MW: 50295.9 Da PI: 7.1966

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG004151.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.3	1.3e-31	250	305	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ CCG004151.1 250 KARRCWSPDLHRRFVNALHMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 305 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.491	247	307	IPR017930	Myb domain
SuperFamily	SSF46689	1.52E-16	247	308	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-28	248	308	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-26	250	305	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-7	252	303	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MASPSELSLD CNPHSYSMLL KSYGDQNDQT EKLEEYLSRL EEERLKIDAF KRELPLCMQL 60 LTSAVETSRQ KLQAYRGNQV PIPVLEEFIP LKTSTSETPE KTSNISDKAN WMTTAQLWSQ 120 ESNETKPQTT LTSPKLTDIG FNVSSKLILD TKQRNGGAFL PFSKERNLCP SPTLALAACT 180 DEHLELDHKR FSETENGFSC PKRESSGNKM VVIEQGKGAG NGSSSDGHAT NTATIASAST 240 NSSTSQTHRK ARRCWSPDLH RRFVNALHML GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ 300 KYRLHTRRPS PSPQAAGAPA PHLVVLGGIW VPPEYATAAA AAHSGGATLY GAHPASHAPP 360 PHFCATPPAS QDFYTAAAAP PPPLHHHTLH HQLQLFRPTS QVHGSPESDF RGSRDRSESI 420 EDGKSESSSW KGESGENDGG ERKGRAAFRE EGEESNGSKF

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MASPSELSLD CNPHSYSMLL KSYGDQNDQT EKLEEYLSRL EEERLKIDAF KRELPLCMQL  60
LTSAVETSRQ KLQAYRGNQV PIPVLEEFIP LKTSTSETPE KTSNISDKAN WMTTAQLWSQ  120
ESNETKPQTT LTSPKLTDIG FNVSSKLILD TKQRNGGAFL PFSKERNLCP SPTLALAACT  180
DEHLELDHKR FSETENGFSC PKRESSGNKM VVIEQGKGAG NGSSSDGHAT NTATIASAST  240
NSSTSQTHRK ARRCWSPDLH RRFVNALHML GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ  300
KYRLHTRRPS PSPQAAGAPA PHLVVLGGIW VPPEYATAAA AAHSGGATLY GAHPASHAPP  360
PHFCATPPAS QDFYTAAAAP PPPLHHHTLH HQLQLFRPTS QVHGSPESDF RGSRDRSESI  420
EDGKSESSSW KGESGENDGG ERKGRAAFRE EGEESNGSKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-13	250	303	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-13	250	303	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-13	250	303	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	250	303	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	250	303	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	250	303	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-13	250	303	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-13	250	303	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-13	250	303	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-13	250	303	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-13	250	303	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-13	250	303	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269\|PubMed:25132385}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269\|PubMed:25132385}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013227.1	0.0	PREDICTED: uncharacterized protein LOC105117313
Swissprot	Q9ZQ85	1e-130	EFM_ARATH; Myb family transcription factor EFM
TrEMBL	B9H993	0.0	B9H993_POPTR; Uncharacterized protein
STRING	POPTR_0006s16000.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5466	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	3e-89	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]