PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003952.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 91aa    MW: 10268.6 Da    PI: 9.9577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003952.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.3e-0722591754
                 HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  +   +L++llP   + +s+K+s a  L+++++YIksL
  CCG003952.1 22 LDLVTKLQQLLPGTRNRRSEKVSAAKALQETCNYIKSL 59
                 566679*******6699********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.991559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-81979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-82077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-42159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRKSRSRQ SGGSRINDDQ ILDLVTKLQQ LLPGTRNRRS EKVSAAKALQ ETCNYIKSLH  60
REVDDLSERL SELLETTDTA QAAIIRNLLT Q
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167642e-38AC216764.1 Populus trichocarpa clone POP014-L21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047163.16e-59PREDICTED: transcription factor PRE3-like
RefseqXP_011047164.16e-59PREDICTED: transcription factor PRE3-like
SwissprotF4JCN93e-36PRE4_ARATH; Transcription factor PRE4
TrEMBLB9N4B31e-43B9N4B3_POPTR; Uncharacterized protein
STRINGPOPTR_0015s07460.12e-44(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.13e-23activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]