PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003868.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 1150aa    MW: 130342 Da    PI: 7.6694
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003868.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.4e-09553856
                 -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++ ql++L +++++++yps++++e+ A   +Lt +qV+ WF  +R  ek
  CCG003868.1  5 SPLQLQALLKFYAEDKYPSQRAMEDFAVVSNLTFKQVRGWFIEKRRSEK 53
                 788******************************************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.24155IPR001356Homeobox domain
SMARTSM003898.3E-6159IPR001356Homeobox domain
SuperFamilySSF466891.92E-9357IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-8357IPR009057Homeodomain-like
CDDcd000862.59E-8356No hitNo description
PfamPF000462.0E-6553IPR001356Homeobox domain
SMARTSM005713.5E-11386445IPR018501DDT domain
PROSITE profilePS5082712.922386445IPR018501DDT domain
PfamPF027918.0E-10387442IPR018501DDT domain
PfamPF156121.5E-6666706IPR028942WHIM1 domain
PfamPF156131.5E-11799872IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1150 aa     Download sequence    Send to blast
MKRKSPLQLQ ALLKFYAEDK YPSQRAMEDF AVVSNLTFKQ VRGWFIEKRR SEKSKNELIE  60
PPRLTKKLSV FKGRKGAAVA SDARKMLKQL ELSASTIVKS NKPSSSKYKH APSEVQGRIG  120
KRRKKLVLIQ DLLTSDYILG KIFRKDGPPL GLEFDSLPTR AFHGCEDSRN SHPVHQENQR  180
ANKRGKVSMC AAFDDQNCNE SAPVKKHGMG KGLMTVWRVT NPDGGDFPTG IHCGGSQITV  240
TPQISTPMPR KQPPQKKMRR QPVSSLVKQR MLQKELQEKR KPSVKRREAE SKRDEIQKQS  300
FREKCELALE RLMNQDRLNQ FAMLVDDEEL ELRELRAGPN PLTCTEHFAA NRLYGCSLCK  360
DVLVKFPPNS VKLKQPFAMQ PWDSSPEAVK KLFKVFHFLY TYSVTVDICP FTLDELAQAF  420
HDKDSFLLGK IHVALLKLLL SDVETEISSG LLPHLSISCK FLALLHSVED QEFVVEFWKN  480
SLNPLTWTEI LCQVLIAAGY GSKQGGFRRE VLSKEMSLMV KYGLHPGTLK GELFQLLSVQ  540
GNNGLKVSDL AKSSQIVELN LASTTDELEL LICSTLSSDI TLFEKISSST FRLRINTLAK  600
EASGFQSDTE DSGIVHEDFH DNGASSSSNS DCDSENSSPR NLKLIDYPKR KNKMLTFENE  660
IDESCPGEVW LLGLMEGEYS DLSIEEKLNG LVALIDLVSA GSSIRVEDLA KPTIESVPNI  720
YHHGSGAKIK RSSMKDNVPR PSWVHAGQIN DTKEAYNSSK FFPVDSSVLF SKPDGKDKLS  780
GKEKETEGMG LGINLHPMQS IFLGSDRRYN RYWLFLGPCN SYDPGHKRVY FESSEDGHWE  840
VIDTEEALRA LLSVLDDRGR REALLIESLE KRETFLCQEM SSKMVNDSGV GYFTQSDQPE  900
LETVREDSSS PVSDVDNNLT LTDIANDSLP PMSAIVLETG KKGKEENQKW NRLRQYDTWI  960
WNCFYCDLNA VKRSKRSYLE SLRRCETCHD LYWRDEKHCK ICHTTFELDF DLEERYAIHS  1020
ATCRQKEDNV MCPKHKVLSS KLQSLKAAVY AIETVMPEDA LVGAWTKSAH RLWVRRLRRT  1080
SSLAELLQVV ADFVAAINED WLCQCNLAQG SSTYMEEIIT CFPTMPQTSS ALALWLMKLD  1140
ELISPYLEKI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165910.0AC216591.1 Populus trichocarpa clone POP002-D23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008202.10.0PREDICTED: uncharacterized protein LOC105113647 isoform X1
RefseqXP_011008203.10.0PREDICTED: uncharacterized protein LOC105113647 isoform X1
RefseqXP_011013124.10.0PREDICTED: uncharacterized protein LOC105117236 isoform X1
RefseqXP_011013125.10.0PREDICTED: uncharacterized protein LOC105117236 isoform X1
RefseqXP_011013126.10.0PREDICTED: uncharacterized protein LOC105117236 isoform X1
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLA0A2K1XYM70.0A0A2K1XYM7_POPTR; Uncharacterized protein
STRINGPOPTR_0014s17140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61181519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator