PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG003733.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 336aa MW: 38300.2 Da PI: 9.5142 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.9 | 1.7e-15 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n++ r +t+ kR++g+ KKA E +LC+++++vii++++ CCG003733.1 11 IRNERSRMITYHKRKKGLTKKAREFQILCGVDACVIILGPK 51 89************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.4E-14 | 1 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.93E-18 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.11 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.95E-19 | 2 | 86 | No hit | No description |
PRINTS | PR00404 | 4.5E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-17 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGRGKLTMEL IRNERSRMIT YHKRKKGLTK KAREFQILCG VDACVIILGP KLNNHPVDVE 60 TWPTDRIEVR RIINRFRSEG ADRKKTQDLS FFFEARKKKL DDEIAKLRKA CMEAKFPAWD 120 NRLNLLSLEQ LRVLAGVFES KLDVARGWIL KLKGNPFLME DSKSGINAAG SISDKSSLLA 180 PLLPKNIELE ALNQQPFPCA KPIDMPLATC YPSHQLQQML PFNVNPINSP MLMMMNHEDF 240 GHFGGLSSSS TIKSTVQYNY DPATEMIGNM MFNNPSWAHS ASYHGPSRQP ISPYRQGPMT 300 QNVSSQLCIP QFSYFFDVNE LEMNRTENFA MKTDAF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 98 | RKKTQDLSFFFEARKKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC184082 | 0.0 | AC184082.2 Populus trichocarpa clone Pop1-55P2, complete sequence. | |||
GenBank | AC216450 | 0.0 | AC216450.1 Populus trichocarpa clone POP008-B21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044609.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL19 | ||||
TrEMBL | A0A2K2C1G8 | 0.0 | A0A2K2C1G8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22220.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-23 | M-type_MADS family protein |