PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG003652.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRF | ||||||||
Protein Properties | Length: 536aa MW: 58352.8 Da PI: 8.8216 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.5 | 2.7e-24 | 183 | 225 | 2 | 44 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e CCG003652.1 183 LEPGRCRRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKHVE 225 69***************************************97 PP | |||||||
2 | QLQ | 46.2 | 1.4e-16 | 133 | 163 | 2 | 32 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +FT++Q+ +L++Q+++y y+ a++PvPp+ l CCG003652.1 133 PFTNTQWKELERQAMIYNYITASVPVPPQFL 163 9***************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-9 | 132 | 168 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.814 | 133 | 168 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.7E-10 | 133 | 163 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.596 | 182 | 226 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.4E-20 | 184 | 225 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MMTTDGGLNV SNKVAKEINT TSSSSNVDYG VKLHQPIDHH QSFPSSTPMI VPHVNHHRPL 60 FDKGPTSSCD RNKSLMSNIS DRMYRVVAGG ATSGGVAGVR NFKPFDISET SIYTAASPFR 120 SPGGNMAASL GVPFTNTQWK ELERQAMIYN YITASVPVPP QFLISTPRMG NGLNVRFSNG 180 ADLEPGRCRR TDGKKWRCSR DVAPDQKYCE RHMHRGRPRS RKHVELNASN NNNKKNRHNP 240 AICPEAHVTV AISKPTINNS NSGSASHDQF FGPMPQPHIQ TPVFVNKTSE KTSTFDVNGA 300 YGSTFKEPRS LDWMLKGEGG PIAKNDQQWP HLVHKEIELA PEGSFNCASV LKQHYQGESL 360 NLNSFGNFNS REDQQSNQYS LFLDEAPRSF TDAWSNDAIS RSTSSVSSDG KLHLSPLSLS 420 MGSNRSADDE MGQIQMGLGL IKSDRNQECG NTSSTPGGPL AEVLQLRTSN TTGTNQSSSM 480 MENGESISPP ATTVSSPSGV LQKTLASFSD SSGNSSPTLA SSRTKPEIAM LWLNQG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043710.1 | 0.0 | PREDICTED: growth-regulating factor 1-like isoform X1 | ||||
TrEMBL | A0A2K1Y7R0 | 0.0 | A0A2K1Y7R0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s02950.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 3e-38 | growth-regulating factor 7 |